Experiment: Nickel (II) chloride 0.4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO_2028 and SO_2029 overlap by 7 nucleotides SO_2029 and SO2027.3 are separated by 155 nucleotides SO2027.3 and SO2031 overlap by 65 nucleotides SO2031 and SO2032 are separated by 59 nucleotides
SO_2028: SO_2028 - no description, at 2,127,290 to 2,128,105
_2028
SO_2029: SO_2029 - no description, at 2,128,099 to 2,128,365
_2029
SO2027.3: SO2027.3 - hypothetical transposase (NCBI ptt file), at 2,128,521 to 2,128,946
SO2027.3
SO2031: SO2031 - ISSod1, transposase OrfB (NCBI ptt file), at 2,128,882 to 2,129,691
SO2031
SO2032: SO2032 - ISSod1, transposase OrfA (NCBI ptt file), at 2,129,751 to 2,130,041
SO2032
Position (kb)
2128
2129 Strain fitness (log2 ratio)
-1
0
1 at 2128.561 kb on + strand at 2128.579 kb on - strand, within SO2027.3 at 2128.612 kb on - strand, within SO2027.3 at 2128.622 kb on - strand, within SO2027.3 at 2128.756 kb on + strand, within SO2027.3 at 2128.837 kb on + strand, within SO2027.3 at 2128.878 kb on - strand, within SO2027.3
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.4 mM remove 2,128,561 + -0.5 2,128,579 - SO2027.3 0.14 -1.4 2,128,612 - SO2027.3 0.21 -1.3 2,128,622 - SO2027.3 0.24 -0.9 2,128,756 + SO2027.3 0.55 -1.2 2,128,837 + SO2027.3 0.74 -0.3 2,128,878 - SO2027.3 0.84 +0.2
Or see this region's nucleotide sequence