Experiment: Nickel (II) chloride 0.4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO4616 and dinF are separated by 22 nucleotides dinF and SO4618 are separated by 77 nucleotides
SO4616: SO4616 - polysaccharide deacetylase family protein (NCBI ptt file), at 4,809,696 to 4,810,742
SO4616
SO4617: dinF - DNA-damage-inducible protein F (NCBI ptt file), at 4,810,765 to 4,812,132
dinF
SO4618: SO4618 - prolyl oligopeptidase family protein (NCBI ptt file), at 4,812,210 to 4,814,147
SO4618
Position (kb) 4810
4811
4812
4813 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4809.769 kb on + strand at 4809.769 kb on + strand at 4809.774 kb on + strand at 4809.777 kb on - strand at 4809.824 kb on - strand, within SO4616 at 4809.961 kb on + strand, within SO4616 at 4810.012 kb on - strand, within SO4616 at 4810.014 kb on + strand, within SO4616 at 4810.105 kb on + strand, within SO4616 at 4810.113 kb on + strand, within SO4616 at 4810.126 kb on - strand, within SO4616 at 4810.127 kb on + strand, within SO4616 at 4810.152 kb on + strand, within SO4616 at 4810.152 kb on + strand, within SO4616 at 4810.152 kb on + strand, within SO4616 at 4810.152 kb on + strand, within SO4616 at 4810.152 kb on + strand, within SO4616 at 4810.160 kb on - strand, within SO4616 at 4810.160 kb on - strand, within SO4616 at 4810.160 kb on - strand, within SO4616 at 4810.160 kb on - strand, within SO4616 at 4810.160 kb on - strand, within SO4616 at 4810.160 kb on - strand, within SO4616 at 4810.160 kb on - strand, within SO4616 at 4810.160 kb on - strand, within SO4616 at 4810.191 kb on - strand, within SO4616 at 4810.277 kb on - strand, within SO4616 at 4810.326 kb on - strand, within SO4616 at 4810.369 kb on - strand, within SO4616 at 4810.378 kb on + strand, within SO4616 at 4810.431 kb on - strand, within SO4616 at 4810.478 kb on - strand, within SO4616 at 4810.493 kb on + strand, within SO4616 at 4810.574 kb on + strand, within SO4616 at 4810.574 kb on + strand, within SO4616 at 4810.582 kb on - strand, within SO4616 at 4810.582 kb on - strand, within SO4616 at 4810.622 kb on - strand, within SO4616 at 4810.632 kb on - strand, within SO4616 at 4810.659 kb on - strand at 4810.753 kb on + strand at 4810.753 kb on + strand at 4810.761 kb on - strand at 4810.832 kb on + strand at 4810.954 kb on - strand, within dinF at 4810.954 kb on - strand, within dinF at 4810.954 kb on - strand, within dinF at 4811.019 kb on + strand, within dinF at 4811.019 kb on + strand, within dinF at 4811.019 kb on + strand, within dinF at 4811.019 kb on + strand, within dinF at 4811.022 kb on - strand, within dinF at 4811.027 kb on + strand, within dinF at 4811.027 kb on - strand, within dinF at 4811.027 kb on - strand, within dinF at 4811.027 kb on - strand, within dinF at 4811.027 kb on - strand, within dinF at 4811.027 kb on - strand, within dinF at 4811.027 kb on - strand, within dinF at 4811.070 kb on - strand, within dinF at 4811.086 kb on + strand, within dinF at 4811.122 kb on + strand, within dinF at 4811.164 kb on - strand, within dinF at 4811.204 kb on + strand, within dinF at 4811.204 kb on + strand, within dinF at 4811.204 kb on + strand, within dinF at 4811.204 kb on + strand, within dinF at 4811.212 kb on - strand, within dinF at 4811.212 kb on - strand, within dinF at 4811.212 kb on - strand, within dinF at 4811.294 kb on + strand, within dinF at 4811.373 kb on - strand, within dinF at 4811.427 kb on - strand, within dinF at 4811.534 kb on + strand, within dinF at 4811.542 kb on - strand, within dinF at 4811.566 kb on + strand, within dinF at 4811.576 kb on + strand, within dinF at 4811.576 kb on + strand, within dinF at 4811.641 kb on + strand, within dinF at 4811.675 kb on + strand, within dinF at 4811.676 kb on + strand, within dinF at 4811.698 kb on + strand, within dinF at 4811.745 kb on + strand, within dinF at 4811.823 kb on - strand, within dinF at 4811.825 kb on + strand, within dinF at 4811.825 kb on + strand, within dinF at 4811.825 kb on + strand, within dinF at 4811.825 kb on + strand, within dinF at 4811.833 kb on - strand, within dinF at 4811.833 kb on - strand, within dinF at 4811.833 kb on - strand, within dinF at 4811.833 kb on - strand, within dinF at 4811.835 kb on + strand, within dinF at 4811.835 kb on + strand, within dinF at 4811.843 kb on - strand, within dinF at 4811.843 kb on - strand, within dinF at 4811.843 kb on - strand, within dinF at 4811.843 kb on - strand, within dinF at 4811.844 kb on - strand, within dinF at 4811.848 kb on + strand, within dinF at 4811.848 kb on + strand, within dinF at 4811.927 kb on + strand, within dinF at 4811.937 kb on + strand, within dinF at 4811.937 kb on + strand, within dinF at 4811.937 kb on + strand, within dinF at 4811.937 kb on + strand, within dinF at 4811.937 kb on + strand, within dinF at 4811.945 kb on - strand, within dinF at 4811.945 kb on - strand, within dinF at 4811.957 kb on - strand, within dinF at 4812.028 kb on - strand at 4812.038 kb on - strand at 4812.038 kb on - strand at 4812.080 kb on + strand at 4812.080 kb on + strand at 4812.088 kb on - strand at 4812.088 kb on - strand at 4812.124 kb on - strand at 4812.561 kb on + strand, within SO4618 at 4812.604 kb on + strand, within SO4618 at 4812.604 kb on + strand, within SO4618 at 4812.604 kb on + strand, within SO4618 at 4812.612 kb on - strand, within SO4618 at 4812.612 kb on - strand, within SO4618 at 4812.612 kb on - strand, within SO4618 at 4812.612 kb on - strand, within SO4618 at 4812.713 kb on - strand, within SO4618 at 4812.758 kb on + strand, within SO4618 at 4812.906 kb on + strand, within SO4618 at 4812.914 kb on - strand, within SO4618 at 4812.938 kb on + strand, within SO4618 at 4813.001 kb on - strand, within SO4618 at 4813.012 kb on + strand, within SO4618 at 4813.033 kb on + strand, within SO4618 at 4813.041 kb on - strand, within SO4618 at 4813.041 kb on - strand, within SO4618 at 4813.055 kb on + strand, within SO4618 at 4813.063 kb on - strand, within SO4618 at 4813.107 kb on - strand, within SO4618
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.4 mM remove 4,809,769 + -2.2 4,809,769 + +2.7 4,809,774 + -0.8 4,809,777 - -0.4 4,809,824 - SO4616 0.12 +0.7 4,809,961 + SO4616 0.25 +2.2 4,810,012 - SO4616 0.30 +0.7 4,810,014 + SO4616 0.30 +0.3 4,810,105 + SO4616 0.39 +1.0 4,810,113 + SO4616 0.40 -1.4 4,810,126 - SO4616 0.41 +0.2 4,810,127 + SO4616 0.41 -0.7 4,810,152 + SO4616 0.44 +0.4 4,810,152 + SO4616 0.44 +0.1 4,810,152 + SO4616 0.44 +0.8 4,810,152 + SO4616 0.44 +0.1 4,810,152 + SO4616 0.44 +0.1 4,810,160 - SO4616 0.44 -0.4 4,810,160 - SO4616 0.44 -1.8 4,810,160 - SO4616 0.44 -1.8 4,810,160 - SO4616 0.44 +0.4 4,810,160 - SO4616 0.44 -0.1 4,810,160 - SO4616 0.44 -0.6 4,810,160 - SO4616 0.44 +0.8 4,810,160 - SO4616 0.44 -0.2 4,810,191 - SO4616 0.47 -0.5 4,810,277 - SO4616 0.55 +0.5 4,810,326 - SO4616 0.60 +1.2 4,810,369 - SO4616 0.64 +0.2 4,810,378 + SO4616 0.65 +0.5 4,810,431 - SO4616 0.70 -2.5 4,810,478 - SO4616 0.75 -1.0 4,810,493 + SO4616 0.76 +0.1 4,810,574 + SO4616 0.84 +1.1 4,810,574 + SO4616 0.84 +1.9 4,810,582 - SO4616 0.85 -1.2 4,810,582 - SO4616 0.85 -2.5 4,810,622 - SO4616 0.88 -0.2 4,810,632 - SO4616 0.89 -1.5 4,810,659 - -0.4 4,810,753 + +1.0 4,810,753 + +1.0 4,810,761 - -0.6 4,810,832 + -0.4 4,810,954 - dinF SO4617 0.14 -2.1 4,810,954 - dinF SO4617 0.14 -1.4 4,810,954 - dinF SO4617 0.14 -2.2 4,811,019 + dinF SO4617 0.19 -0.8 4,811,019 + dinF SO4617 0.19 -0.8 4,811,019 + dinF SO4617 0.19 -1.4 4,811,019 + dinF SO4617 0.19 -0.7 4,811,022 - dinF SO4617 0.19 -0.8 4,811,027 + dinF SO4617 0.19 +0.5 4,811,027 - dinF SO4617 0.19 -0.6 4,811,027 - dinF SO4617 0.19 -1.4 4,811,027 - dinF SO4617 0.19 -0.6 4,811,027 - dinF SO4617 0.19 -1.1 4,811,027 - dinF SO4617 0.19 -1.9 4,811,027 - dinF SO4617 0.19 -1.3 4,811,070 - dinF SO4617 0.22 -0.6 4,811,086 + dinF SO4617 0.23 -1.5 4,811,122 + dinF SO4617 0.26 -2.3 4,811,164 - dinF SO4617 0.29 -0.5 4,811,204 + dinF SO4617 0.32 -2.1 4,811,204 + dinF SO4617 0.32 -2.4 4,811,204 + dinF SO4617 0.32 -1.8 4,811,204 + dinF SO4617 0.32 -1.0 4,811,212 - dinF SO4617 0.33 -2.2 4,811,212 - dinF SO4617 0.33 -0.9 4,811,212 - dinF SO4617 0.33 +0.2 4,811,294 + dinF SO4617 0.39 -2.8 4,811,373 - dinF SO4617 0.44 -1.4 4,811,427 - dinF SO4617 0.48 -1.1 4,811,534 + dinF SO4617 0.56 -0.6 4,811,542 - dinF SO4617 0.57 -1.0 4,811,566 + dinF SO4617 0.59 -0.9 4,811,576 + dinF SO4617 0.59 -1.2 4,811,576 + dinF SO4617 0.59 -0.1 4,811,641 + dinF SO4617 0.64 -0.8 4,811,675 + dinF SO4617 0.67 -1.0 4,811,676 + dinF SO4617 0.67 -1.0 4,811,698 + dinF SO4617 0.68 -1.5 4,811,745 + dinF SO4617 0.72 -1.1 4,811,823 - dinF SO4617 0.77 +0.0 4,811,825 + dinF SO4617 0.77 -2.0 4,811,825 + dinF SO4617 0.77 -2.5 4,811,825 + dinF SO4617 0.77 -0.7 4,811,825 + dinF SO4617 0.77 -1.2 4,811,833 - dinF SO4617 0.78 -1.2 4,811,833 - dinF SO4617 0.78 -1.0 4,811,833 - dinF SO4617 0.78 -0.2 4,811,833 - dinF SO4617 0.78 -0.4 4,811,835 + dinF SO4617 0.78 -0.6 4,811,835 + dinF SO4617 0.78 -2.8 4,811,843 - dinF SO4617 0.79 -1.0 4,811,843 - dinF SO4617 0.79 -0.2 4,811,843 - dinF SO4617 0.79 -0.8 4,811,843 - dinF SO4617 0.79 -0.5 4,811,844 - dinF SO4617 0.79 -1.5 4,811,848 + dinF SO4617 0.79 -2.0 4,811,848 + dinF SO4617 0.79 -0.1 4,811,927 + dinF SO4617 0.85 -1.6 4,811,937 + dinF SO4617 0.86 +1.1 4,811,937 + dinF SO4617 0.86 -0.9 4,811,937 + dinF SO4617 0.86 -0.5 4,811,937 + dinF SO4617 0.86 +1.1 4,811,937 + dinF SO4617 0.86 -0.5 4,811,945 - dinF SO4617 0.86 -1.3 4,811,945 - dinF SO4617 0.86 -2.0 4,811,957 - dinF SO4617 0.87 -1.7 4,812,028 - -0.3 4,812,038 - -1.2 4,812,038 - -1.2 4,812,080 + -0.7 4,812,080 + -1.2 4,812,088 - -0.2 4,812,088 - -1.4 4,812,124 - -1.9 4,812,561 + SO4618 0.18 -1.1 4,812,604 + SO4618 0.20 +0.9 4,812,604 + SO4618 0.20 -0.1 4,812,604 + SO4618 0.20 -0.1 4,812,612 - SO4618 0.21 -0.1 4,812,612 - SO4618 0.21 -0.2 4,812,612 - SO4618 0.21 +0.3 4,812,612 - SO4618 0.21 -0.9 4,812,713 - SO4618 0.26 +0.3 4,812,758 + SO4618 0.28 +1.0 4,812,906 + SO4618 0.36 -0.7 4,812,914 - SO4618 0.36 -1.0 4,812,938 + SO4618 0.38 -2.1 4,813,001 - SO4618 0.41 +0.7 4,813,012 + SO4618 0.41 -0.1 4,813,033 + SO4618 0.42 -0.9 4,813,041 - SO4618 0.43 -0.4 4,813,041 - SO4618 0.43 -0.5 4,813,055 + SO4618 0.44 -1.0 4,813,063 - SO4618 0.44 -1.6 4,813,107 - SO4618 0.46 -2.2
Or see this region's nucleotide sequence