Strain Fitness in Shewanella oneidensis MR-1 around SO4473

Experiment: Nickel (II) chloride 0.4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nickel (II) chloride 0.4 mM
4,661,188	+	ntrC	SO4472	0.36	+0.9
4,661,188	+	ntrC	SO4472	0.36	+1.0
4,661,198	+	ntrC	SO4472	0.37	+0.4
4,661,198	+	ntrC	SO4472	0.37	+1.7
4,661,204	-	ntrC	SO4472	0.37	+0.4
4,661,233	-	ntrC	SO4472	0.39	+1.1
4,661,237	-	ntrC	SO4472	0.40	+1.1
4,661,361	+	ntrC	SO4472	0.48	+2.6
4,661,379	-	ntrC	SO4472	0.50	+2.5
4,661,379	-	ntrC	SO4472	0.50	+1.7
4,661,479	+	ntrC	SO4472	0.57	+1.6
4,661,497	-	ntrC	SO4472	0.58	+2.0
4,661,522	+	ntrC	SO4472	0.60	-0.1
4,661,567	+	ntrC	SO4472	0.63	+0.5
4,661,589	-	ntrC	SO4472	0.64	+2.1
4,661,715	+	ntrC	SO4472	0.73	+1.0
4,661,725	-	ntrC	SO4472	0.74	+0.9
4,661,756	-	ntrC	SO4472	0.76	+2.8
4,661,778	+	ntrC	SO4472	0.78	+2.0
4,661,786	+	ntrC	SO4472	0.78	+2.9
4,661,814	+	ntrC	SO4472	0.80	+2.2
4,661,959	+				+2.5
4,661,967	-				+1.5
4,661,990	+				+1.6
4,661,990	+				-0.2
4,661,990	+				+2.2
4,661,998	-				+1.4
4,661,998	-				+0.2
4,662,032	+				+0.9
4,662,032	+				+1.3
4,662,032	+				+2.3
4,662,048	+				+2.6
4,662,085	+				+0.7
4,662,085	+				-0.1
4,662,085	+				+1.1
4,662,093	-				-0.1
4,662,093	-				+0.3
4,662,173	+				-1.0
4,662,188	-				-0.6
4,662,194	+				+0.3
4,662,228	-		SO4473	0.12	-0.8
4,662,228	-		SO4473	0.12	-0.2
4,662,230	+		SO4473	0.12	-0.1
4,662,234	+		SO4473	0.13	-0.3
4,662,234	+		SO4473	0.13	-0.0
4,662,234	+		SO4473	0.13	+1.1
4,662,234	+		SO4473	0.13	-0.5
4,662,234	+		SO4473	0.13	+0.2
4,662,234	+		SO4473	0.13	-0.6
4,662,238	-		SO4473	0.14	+0.0
4,662,239	+		SO4473	0.14	-1.0
4,662,239	+		SO4473	0.14	+0.4
4,662,242	-		SO4473	0.14	-1.6
4,662,242	-		SO4473	0.14	-0.0
4,662,247	-		SO4473	0.15	-1.3
4,662,249	+		SO4473	0.16	-1.6
4,662,249	+		SO4473	0.16	-0.3
4,662,261	+		SO4473	0.18	+0.0
4,662,266	+		SO4473	0.19	-0.7
4,662,271	+		SO4473	0.19	+0.8
4,662,274	-		SO4473	0.20	-0.1
4,662,274	-		SO4473	0.20	-0.7
4,662,279	-		SO4473	0.21	-0.2
4,662,279	-		SO4473	0.21	+0.3
4,662,279	-		SO4473	0.21	+0.1
4,662,289	+		SO4473	0.23	-0.4
4,662,291	+		SO4473	0.23	+1.1
4,662,297	-		SO4473	0.24	-1.0
4,662,299	-		SO4473	0.24	-1.1
4,662,315	-		SO4473	0.27	+0.5
4,662,319	+		SO4473	0.28	-0.1
4,662,322	-		SO4473	0.28	-0.4
4,662,327	-		SO4473	0.29	-0.6
4,662,327	-		SO4473	0.29	+0.8
4,662,346	-		SO4473	0.33	+0.2
4,662,353	+		SO4473	0.34	-0.3
4,662,353	+		SO4473	0.34	+0.5
4,662,361	-		SO4473	0.35	+1.0
4,662,402	-		SO4473	0.43	-0.4
4,662,408	-		SO4473	0.44	+0.5
4,662,417	+		SO4473	0.45	-0.1
4,662,479	+		SO4473	0.56	+0.7
4,662,479	+		SO4473	0.56	-0.2
4,662,540	-		SO4473	0.67	+0.2
4,662,552	-		SO4473	0.69	-0.1
4,662,558	+		SO4473	0.70	+0.5
4,662,558	+		SO4473	0.70	-0.2
4,662,560	+		SO4473	0.70	-0.1
4,662,563	+		SO4473	0.71	-0.5
4,662,566	-		SO4473	0.71	-1.3
4,662,566	-		SO4473	0.71	+0.3
4,662,568	+		SO4473	0.72	-0.4
4,662,568	-				+0.5
4,662,577	-		SO4473	0.73	-0.3
4,662,577	-		SO4473	0.73	+0.2
4,662,577	-		SO4473	0.73	-1.2
4,662,578	+		SO4473	0.74	-0.6
4,662,594	+		SO4473	0.76	+0.2
4,662,594	+		SO4473	0.76	+0.6
4,662,594	+		SO4473	0.76	-0.1
4,662,602	-		SO4473	0.78	+0.7
4,662,604	+		SO4473	0.78	+1.0
4,662,604	+		SO4473	0.78	+0.7
4,662,604	+		SO4473	0.78	-0.1
4,662,604	+		SO4473	0.78	-0.0
4,662,604	+		SO4473	0.78	-0.2
4,662,604	+		SO4473	0.78	+0.7
4,662,604	+		SO4473	0.78	+0.9
4,662,604	+		SO4473	0.78	+0.2
4,662,604	+		SO4473	0.78	-0.4
4,662,604	+		SO4473	0.78	+0.2
4,662,604	+		SO4473	0.78	+0.3
4,662,604	+		SO4473	0.78	+0.1
4,662,612	-		SO4473	0.80	+0.2
4,662,612	-		SO4473	0.80	+0.5
4,662,612	-		SO4473	0.80	+0.1
4,662,612	-		SO4473	0.80	-0.7
4,662,612	-		SO4473	0.80	+0.0
4,662,612	-		SO4473	0.80	-0.0
4,662,612	-		SO4473	0.80	-0.4
4,662,612	-		SO4473	0.80	+0.5
4,662,612	-		SO4473	0.80	-0.2
4,662,612	-		SO4473	0.80	+0.8
4,662,612	-		SO4473	0.80	-1.0
4,662,612	-		SO4473	0.80	+1.0
4,662,612	-		SO4473	0.80	-0.4
4,662,612	-		SO4473	0.80	+0.6
4,662,612	-				+0.3
4,662,612	-		SO4473	0.80	+0.0
4,662,612	-		SO4473	0.80	-0.4
4,662,615	+		SO4473	0.80	+0.7
4,662,620	+		SO4473	0.81	+0.8
4,662,620	+		SO4473	0.81	-0.3
4,662,620	+		SO4473	0.81	-0.5
4,662,620	+		SO4473	0.81	+0.7
4,662,620	+		SO4473	0.81	-0.5
4,662,628	-		SO4473	0.82	+0.2
4,662,628	-		SO4473	0.82	+0.4
4,662,628	-		SO4473	0.82	-1.5
4,662,628	-		SO4473	0.82	+0.9
4,662,628	-		SO4473	0.82	+0.5
4,662,628	-		SO4473	0.82	-0.1
4,662,628	-		SO4473	0.82	-0.8
4,662,635	-		SO4473	0.84	-1.3
4,662,653	-		SO4473	0.87	+0.9
4,662,661	-		SO4473	0.88	-1.6
4,662,668	+		SO4473	0.89	-0.4
4,662,668	+		SO4473	0.89	+0.3
4,662,670	-		SO4473	0.90	+0.3
4,662,670	-		SO4473	0.90	+0.2
4,662,676	-				-0.4
4,662,682	+				+1.4
4,662,716	-				+0.3
4,662,756	+				+1.5
4,662,762	-				+1.1
4,662,798	-				+0.9
4,662,801	+				-0.3
4,662,801	+				-0.4
4,662,801	+				+0.6
4,662,801	-				+0.7
4,662,809	+				+1.1
4,662,809	-				-0.4
4,662,809	-				+0.6
4,662,809	-				-0.7
4,662,809	-				+1.0
4,662,809	-				-0.0
4,662,809	-				-0.3
4,662,817	-				+0.2
4,662,820	+				-0.1
4,662,822	-				-2.3
4,662,828	-				+0.0
4,662,834	+				+0.8
4,662,834	+				+1.4
4,662,841	+				+0.5
4,662,841	+				-0.8
4,662,841	+				-0.6
4,662,841	+				+0.5
4,662,841	+				-1.1
4,662,841	+				-0.5
4,662,841	+				+0.1
4,662,842	-				-0.4
4,662,849	-				-0.5
4,662,849	-				-0.6
4,662,849	-				+0.7
4,662,849	-				-0.0
4,662,849	-				+0.1
4,662,849	-				+0.4
4,662,849	-				+0.6
4,662,849	-				-0.6
4,662,849	-				-0.5
4,662,849	-				+1.5
4,662,886	-				+0.2
4,662,894	-				-0.3
4,662,894	-				+0.3
4,662,915	+				+0.3
4,662,933	+		SO4474	0.15	+0.3
4,662,936	-		SO4474	0.16	+0.9
4,662,941	+		SO4474	0.17	+0.9
4,662,941	+		SO4474	0.17	+0.1
4,662,941	+		SO4474	0.17	-1.9
4,662,949	-		SO4474	0.19	-0.5
4,662,949	-		SO4474	0.19	-0.8
4,662,949	-		SO4474	0.19	-0.4
4,662,949	-		SO4474	0.19	-1.1
4,662,968	+		SO4474	0.25	+0.5
4,662,968	+		SO4474	0.25	+0.1
4,662,980	+		SO4474	0.28	+0.2
4,662,980	+		SO4474	0.28	-0.3
4,662,980	+		SO4474	0.28	+0.1
4,662,980	+		SO4474	0.28	-0.2
4,662,980	+		SO4474	0.28	+0.6
4,662,980	+		SO4474	0.28	+0.6
4,662,980	+		SO4474	0.28	-0.5
4,662,980	+		SO4474	0.28	-1.1
4,662,980	+		SO4474	0.28	-2.5
4,662,980	+		SO4474	0.28	+0.3
4,662,980	+		SO4474	0.28	-0.0
4,662,980	+		SO4474	0.28	-1.1
4,662,980	+		SO4474	0.28	-1.8
4,662,980	+		SO4474	0.28	+1.2
4,662,980	+		SO4474	0.28	-0.4
4,662,980	+		SO4474	0.28	-0.3
4,662,980	+		SO4474	0.28	-0.3
4,662,980	+		SO4474	0.28	-0.9
4,662,980	+		SO4474	0.28	-0.3
4,662,980	+		SO4474	0.28	+0.2
4,662,980	+		SO4474	0.28	-0.1
4,662,980	+		SO4474	0.28	+1.3
4,662,980	+		SO4474	0.28	-1.3
4,662,980	+		SO4474	0.28	+1.1
4,662,980	+		SO4474	0.28	+0.1
4,662,980	+		SO4474	0.28	+0.9
4,662,980	+		SO4474	0.28	-0.3
4,662,980	+		SO4474	0.28	+0.4
4,662,980	+		SO4474	0.28	+0.9
4,662,980	+		SO4474	0.28	+0.1
4,662,980	+		SO4474	0.28	-0.4
4,662,980	+		SO4474	0.28	-0.8
4,662,980	+		SO4474	0.28	-0.2
4,662,980	+		SO4474	0.28	+0.5
4,662,980	+		SO4474	0.28	+0.3
4,662,980	+		SO4474	0.28	+0.6
4,662,980	+		SO4474	0.28	-0.3
4,662,980	+		SO4474	0.28	+0.1
4,662,980	+		SO4474	0.28	-0.3
4,662,980	+		SO4474	0.28	+0.4
4,662,980	+		SO4474	0.28	+0.2
4,662,980	+		SO4474	0.28	-1.7
4,662,980	+		SO4474	0.28	+0.4
4,662,980	+		SO4474	0.28	+0.8
4,662,980	+		SO4474	0.28	+0.4
4,662,980	+		SO4474	0.28	-0.4
4,662,980	+		SO4474	0.28	-0.2
4,662,980	+		SO4474	0.28	+0.3
4,662,980	+		SO4474	0.28	-1.8
4,662,980	+		SO4474	0.28	+0.1
4,662,980	+		SO4474	0.28	-0.3
4,662,980	+		SO4474	0.28	-2.0
4,662,980	+		SO4474	0.28	-0.0
4,662,980	+		SO4474	0.28	-0.1
4,662,988	-		SO4474	0.30	-0.8
4,662,988	-		SO4474	0.30	-0.4
4,662,988	-		SO4474	0.30	+0.9
4,662,988	-		SO4474	0.30	-0.7
4,662,988	-		SO4474	0.30	+0.1
4,662,988	-		SO4474	0.30	+1.0
4,662,988	-		SO4474	0.30	-0.9
4,662,988	-		SO4474	0.30	+0.1
4,662,988	-		SO4474	0.30	+0.3
4,662,988	-		SO4474	0.30	-1.0
4,662,988	-		SO4474	0.30	-0.0
4,662,988	-		SO4474	0.30	+0.9
4,662,988	-		SO4474	0.30	+1.0
4,662,988	-		SO4474	0.30	-0.5
4,662,988	-		SO4474	0.30	-0.2
4,662,988	-		SO4474	0.30	+0.5
4,662,988	-		SO4474	0.30	+0.8
4,662,988	-		SO4474	0.30	+0.1
4,662,988	-		SO4474	0.30	+0.8
4,662,988	-		SO4474	0.30	+1.1
4,662,988	-		SO4474	0.30	-0.8
4,662,988	-		SO4474	0.30	+0.2
4,662,988	-		SO4474	0.30	+0.2
4,662,988	-		SO4474	0.30	-1.2
4,662,988	-		SO4474	0.30	-0.0
4,662,988	-		SO4474	0.30	-0.0
4,662,988	-		SO4474	0.30	-0.1
4,662,988	-				-0.1
4,662,988	-		SO4474	0.30	+0.2
4,662,988	-		SO4474	0.30	+0.1
4,662,988	-		SO4474	0.30	+0.7
4,662,988	-		SO4474	0.30	-1.1
4,662,988	-		SO4474	0.30	+1.1
4,662,988	-		SO4474	0.30	+0.3
4,662,988	-		SO4474	0.30	-0.4
4,662,988	-		SO4474	0.30	+0.7
4,662,988	-		SO4474	0.30	-0.0
4,662,988	-		SO4474	0.30	-0.2
4,662,988	-		SO4474	0.30	+0.6
4,662,988	-		SO4474	0.30	-0.2
4,662,988	-		SO4474	0.30	-0.7
4,662,988	-		SO4474	0.30	-0.6
4,662,988	-		SO4474	0.30	-0.4
4,662,988	-		SO4474	0.30	-0.3
4,662,988	-		SO4474	0.30	-1.1
4,662,988	-		SO4474	0.30	+0.6
4,662,988	-		SO4474	0.30	-2.5
4,662,988	-		SO4474	0.30	-0.1
4,662,988	-		SO4474	0.30	-0.2
4,662,988	-		SO4474	0.30	+0.1
4,662,988	-		SO4474	0.30	-0.2
4,662,988	-		SO4474	0.30	+0.1
4,662,988	-		SO4474	0.30	-0.8
4,662,988	-		SO4474	0.30	-0.1
4,662,988	-		SO4474	0.30	-1.0
4,662,997	+		SO4474	0.33	+0.2
4,663,005	-		SO4474	0.35	-0.5
4,663,046	+		SO4474	0.47	+0.1
4,663,108	+		SO4474	0.64	-0.2
4,663,110	-		SO4474	0.65	-0.2
4,663,110	-		SO4474	0.65	-0.1
4,663,166	-		SO4474	0.81	+0.4
4,663,216	+				-1.4
4,663,423	+				+1.3
4,663,426	-				+2.1
4,663,432	-				+1.8
4,663,432	-				+2.2
4,663,449	+		SO4475	0.11	+0.9
4,663,449	+		SO4475	0.11	+2.5
4,663,449	+		SO4475	0.11	+3.0
4,663,457	-		SO4475	0.12	+1.9
4,663,553	+		SO4475	0.23	+2.3
4,663,553	+		SO4475	0.23	+1.3
4,663,561	-		SO4475	0.24	+0.8
4,663,622	-		SO4475	0.31	+2.2
4,663,623	+		SO4475	0.31	+2.9
4,663,661	-		SO4475	0.35	+1.1
4,663,682	-		SO4475	0.37	+0.7
4,663,727	+		SO4475	0.42	+1.8