Experiment: Nickel (II) chloride 0.4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0885 and SO0886 are separated by 276 nucleotides SO0886 and SO_0887 are separated by 168 nucleotides SO_0887 and SO0888 are separated by 73 nucleotides
SO0885: SO0885 - ABC transporter, ATP-binding protein (NCBI ptt file), at 913,424 to 915,337
SO0885
SO0886: SO0886 - conserved hypothetical protein (NCBI ptt file), at 915,614 to 915,814
SO0886
SO_0887: SO_0887 - agmatine deiminase (RefSeq), at 915,983 to 917,095
_0887
SO0888: SO0888 - amidase family protein (NCBI ptt file), at 917,169 to 918,875
SO0888
Position (kb) 915
916
917
918 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 915.049 kb on - strand, within SO0885 at 915.059 kb on - strand, within SO0885 at 915.059 kb on - strand, within SO0885 at 915.158 kb on - strand at 915.158 kb on - strand at 915.188 kb on - strand at 915.215 kb on + strand at 915.223 kb on - strand at 915.308 kb on + strand at 915.316 kb on - strand at 915.316 kb on - strand at 915.316 kb on - strand at 915.482 kb on + strand at 915.491 kb on - strand at 915.522 kb on + strand at 915.525 kb on + strand at 915.530 kb on - strand at 915.804 kb on + strand at 915.807 kb on - strand at 915.921 kb on - strand at 915.940 kb on + strand at 916.012 kb on + strand at 916.025 kb on - strand at 916.116 kb on + strand, within SO_0887 at 916.183 kb on + strand, within SO_0887 at 916.191 kb on - strand, within SO_0887 at 916.252 kb on - strand, within SO_0887 at 916.296 kb on + strand, within SO_0887 at 916.329 kb on + strand, within SO_0887 at 916.329 kb on + strand, within SO_0887 at 916.370 kb on + strand, within SO_0887 at 916.459 kb on - strand, within SO_0887 at 916.542 kb on - strand, within SO_0887 at 916.555 kb on + strand, within SO_0887 at 916.698 kb on + strand, within SO_0887 at 916.698 kb on + strand, within SO_0887 at 917.003 kb on + strand at 917.019 kb on - strand at 917.072 kb on + strand at 917.213 kb on + strand at 917.221 kb on - strand at 917.312 kb on + strand at 917.334 kb on - strand at 917.383 kb on + strand, within SO0888 at 917.383 kb on + strand, within SO0888 at 917.383 kb on + strand, within SO0888 at 917.383 kb on + strand, within SO0888 at 917.391 kb on - strand, within SO0888 at 917.391 kb on - strand, within SO0888 at 917.411 kb on - strand, within SO0888 at 917.423 kb on - strand, within SO0888 at 917.589 kb on + strand, within SO0888 at 917.589 kb on + strand, within SO0888 at 917.624 kb on + strand, within SO0888 at 917.734 kb on + strand, within SO0888 at 917.761 kb on + strand, within SO0888 at 917.761 kb on + strand, within SO0888 at 917.767 kb on - strand, within SO0888 at 917.769 kb on - strand, within SO0888 at 917.861 kb on + strand, within SO0888 at 918.002 kb on + strand, within SO0888 at 918.010 kb on - strand, within SO0888 at 918.010 kb on - strand, within SO0888
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.4 mM remove 915,049 - SO0885 0.85 +0.0 915,059 - SO0885 0.85 +0.0 915,059 - SO0885 0.85 +0.6 915,158 - -0.7 915,158 - -0.7 915,188 - +0.2 915,215 + +0.1 915,223 - -1.8 915,308 + -0.2 915,316 - -0.1 915,316 - +0.2 915,316 - -0.2 915,482 + -1.2 915,491 - +0.2 915,522 + +0.4 915,525 + +0.3 915,530 - +1.4 915,804 + +0.6 915,807 - +1.0 915,921 - +4.4 915,940 + +0.1 916,012 + +3.9 916,025 - +4.7 916,116 + SO_0887 0.12 +4.8 916,183 + SO_0887 0.18 +5.3 916,191 - SO_0887 0.19 +4.6 916,252 - SO_0887 0.24 +3.9 916,296 + SO_0887 0.28 +4.3 916,329 + SO_0887 0.31 +4.7 916,329 + SO_0887 0.31 +3.9 916,370 + SO_0887 0.35 +4.0 916,459 - SO_0887 0.43 +4.3 916,542 - SO_0887 0.50 +5.1 916,555 + SO_0887 0.51 +4.6 916,698 + SO_0887 0.64 +5.0 916,698 + SO_0887 0.64 +4.8 917,003 + +5.7 917,019 - +4.3 917,072 + +4.8 917,213 + +0.6 917,221 - +0.2 917,312 + +0.5 917,334 - +1.6 917,383 + SO0888 0.13 -0.7 917,383 + SO0888 0.13 +1.3 917,383 + SO0888 0.13 +0.1 917,383 + SO0888 0.13 -0.2 917,391 - SO0888 0.13 +0.3 917,391 - SO0888 0.13 -0.3 917,411 - SO0888 0.14 -0.3 917,423 - SO0888 0.15 +0.2 917,589 + SO0888 0.25 -0.8 917,589 + SO0888 0.25 +0.6 917,624 + SO0888 0.27 -0.3 917,734 + SO0888 0.33 +1.1 917,761 + SO0888 0.35 +0.6 917,761 + SO0888 0.35 +1.0 917,767 - SO0888 0.35 -0.8 917,769 - SO0888 0.35 -0.2 917,861 + SO0888 0.41 +0.3 918,002 + SO0888 0.49 +0.1 918,010 - SO0888 0.49 -0.2 918,010 - SO0888 0.49 +0.3
Or see this region's nucleotide sequence