Experiment: Nickel (II) chloride 0.4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0811 and SO0812 are separated by 203 nucleotides SO0812 and SO0813 are separated by 3 nucleotides
SO0811: SO0811 - inosine-uridine preferring nucleoside hydrolase family protein (NCBI ptt file), at 822,729 to 823,685
SO0811
SO0812: SO0812 - hypothetical protein (NCBI ptt file), at 823,889 to 825,235
SO0812
SO0813: SO0813 - hypothetical protein (NCBI ptt file), at 825,239 to 826,681
SO0813
Position (kb) 823
824
825
826 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 822.912 kb on + strand, within SO0811 at 823.054 kb on + strand, within SO0811 at 823.054 kb on + strand, within SO0811 at 823.110 kb on + strand, within SO0811 at 823.115 kb on + strand, within SO0811 at 823.115 kb on + strand, within SO0811 at 823.115 kb on + strand, within SO0811 at 823.118 kb on - strand, within SO0811 at 823.123 kb on - strand, within SO0811 at 823.383 kb on + strand, within SO0811 at 823.412 kb on + strand, within SO0811 at 823.420 kb on - strand, within SO0811 at 823.430 kb on + strand, within SO0811 at 823.524 kb on + strand, within SO0811 at 823.525 kb on + strand, within SO0811 at 823.533 kb on - strand, within SO0811 at 823.609 kb on + strand at 823.609 kb on + strand at 823.617 kb on - strand at 823.695 kb on + strand at 823.703 kb on - strand at 823.703 kb on - strand at 823.703 kb on - strand at 823.703 kb on - strand at 823.740 kb on + strand at 823.752 kb on + strand at 823.760 kb on - strand at 823.915 kb on - strand at 823.922 kb on - strand at 823.927 kb on + strand at 823.943 kb on - strand at 824.043 kb on + strand, within SO0812 at 824.051 kb on - strand, within SO0812 at 824.100 kb on - strand, within SO0812 at 824.233 kb on + strand, within SO0812 at 824.239 kb on + strand, within SO0812 at 824.247 kb on - strand, within SO0812 at 824.249 kb on - strand, within SO0812 at 824.269 kb on - strand, within SO0812 at 824.271 kb on - strand, within SO0812 at 824.334 kb on - strand, within SO0812 at 824.334 kb on - strand, within SO0812 at 824.588 kb on - strand, within SO0812 at 824.719 kb on + strand, within SO0812 at 824.741 kb on + strand, within SO0812 at 824.787 kb on + strand, within SO0812 at 824.787 kb on + strand, within SO0812 at 824.795 kb on - strand, within SO0812 at 824.795 kb on - strand, within SO0812 at 824.828 kb on - strand, within SO0812 at 824.828 kb on - strand, within SO0812 at 824.856 kb on - strand, within SO0812 at 824.911 kb on + strand, within SO0812 at 824.919 kb on - strand, within SO0812 at 825.003 kb on + strand, within SO0812 at 825.046 kb on + strand, within SO0812 at 825.054 kb on - strand, within SO0812 at 825.158 kb on - strand at 825.183 kb on + strand at 825.203 kb on - strand at 825.244 kb on + strand at 825.465 kb on + strand, within SO0813 at 825.470 kb on + strand, within SO0813 at 825.499 kb on + strand, within SO0813 at 825.507 kb on - strand, within SO0813 at 825.556 kb on + strand, within SO0813 at 825.564 kb on - strand, within SO0813 at 825.594 kb on + strand, within SO0813 at 825.594 kb on + strand, within SO0813 at 825.631 kb on - strand, within SO0813 at 825.631 kb on - strand, within SO0813 at 825.666 kb on - strand, within SO0813 at 825.666 kb on - strand, within SO0813 at 825.753 kb on - strand, within SO0813 at 825.783 kb on + strand, within SO0813 at 825.783 kb on + strand, within SO0813 at 825.791 kb on - strand, within SO0813 at 825.791 kb on - strand, within SO0813 at 825.815 kb on + strand, within SO0813 at 825.815 kb on + strand, within SO0813 at 825.925 kb on + strand, within SO0813 at 825.961 kb on + strand, within SO0813 at 825.961 kb on + strand, within SO0813 at 825.995 kb on - strand, within SO0813 at 825.995 kb on - strand, within SO0813 at 826.054 kb on + strand, within SO0813 at 826.077 kb on - strand, within SO0813 at 826.101 kb on - strand, within SO0813 at 826.124 kb on + strand, within SO0813 at 826.140 kb on - strand, within SO0813 at 826.188 kb on + strand, within SO0813 at 826.216 kb on + strand, within SO0813 at 826.216 kb on + strand, within SO0813 at 826.216 kb on + strand, within SO0813 at 826.216 kb on + strand, within SO0813 at 826.216 kb on + strand, within SO0813 at 826.224 kb on - strand, within SO0813 at 826.224 kb on - strand, within SO0813 at 826.224 kb on - strand, within SO0813 at 826.224 kb on - strand, within SO0813 at 826.224 kb on - strand, within SO0813
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.4 mM remove 822,912 + SO0811 0.19 +1.0 823,054 + SO0811 0.34 -0.7 823,054 + SO0811 0.34 +0.5 823,110 + SO0811 0.40 +0.4 823,115 + SO0811 0.40 +0.3 823,115 + SO0811 0.40 -0.3 823,115 + SO0811 0.40 +1.3 823,118 - SO0811 0.41 +0.9 823,123 - SO0811 0.41 -0.6 823,383 + SO0811 0.68 -3.5 823,412 + SO0811 0.71 +0.6 823,420 - SO0811 0.72 +0.5 823,430 + SO0811 0.73 +0.4 823,524 + SO0811 0.83 +1.2 823,525 + SO0811 0.83 +0.2 823,533 - SO0811 0.84 +1.2 823,609 + +0.2 823,609 + +0.2 823,617 - +1.0 823,695 + +1.1 823,703 - -0.5 823,703 - -0.0 823,703 - +0.6 823,703 - -0.0 823,740 + +0.2 823,752 + -0.8 823,760 - +0.2 823,915 - -0.2 823,922 - -1.0 823,927 + +0.6 823,943 - +0.3 824,043 + SO0812 0.11 +0.3 824,051 - SO0812 0.12 +0.3 824,100 - SO0812 0.16 -0.7 824,233 + SO0812 0.26 +0.1 824,239 + SO0812 0.26 -1.1 824,247 - SO0812 0.27 +0.1 824,249 - SO0812 0.27 +0.0 824,269 - SO0812 0.28 -0.0 824,271 - SO0812 0.28 -0.9 824,334 - SO0812 0.33 -1.3 824,334 - SO0812 0.33 -0.5 824,588 - SO0812 0.52 -1.1 824,719 + SO0812 0.62 -0.1 824,741 + SO0812 0.63 -1.8 824,787 + SO0812 0.67 +1.2 824,787 + SO0812 0.67 -0.1 824,795 - SO0812 0.67 +0.1 824,795 - SO0812 0.67 +0.3 824,828 - SO0812 0.70 +1.8 824,828 - SO0812 0.70 +0.6 824,856 - SO0812 0.72 -0.1 824,911 + SO0812 0.76 +1.0 824,919 - SO0812 0.76 +0.4 825,003 + SO0812 0.83 -0.1 825,046 + SO0812 0.86 -0.2 825,054 - SO0812 0.86 +9.9 825,158 - +0.9 825,183 + +0.2 825,203 - +0.4 825,244 + -0.4 825,465 + SO0813 0.16 -0.3 825,470 + SO0813 0.16 +0.0 825,499 + SO0813 0.18 +0.6 825,507 - SO0813 0.19 -0.4 825,556 + SO0813 0.22 +0.2 825,564 - SO0813 0.23 +0.8 825,594 + SO0813 0.25 +0.6 825,594 + SO0813 0.25 +1.0 825,631 - SO0813 0.27 -0.1 825,631 - SO0813 0.27 +1.2 825,666 - SO0813 0.30 -1.3 825,666 - SO0813 0.30 -0.2 825,753 - SO0813 0.36 +0.2 825,783 + SO0813 0.38 -0.4 825,783 + SO0813 0.38 +0.2 825,791 - SO0813 0.38 +0.6 825,791 - SO0813 0.38 -0.2 825,815 + SO0813 0.40 +0.1 825,815 + SO0813 0.40 +0.9 825,925 + SO0813 0.48 -0.0 825,961 + SO0813 0.50 +0.1 825,961 + SO0813 0.50 -0.1 825,995 - SO0813 0.52 +1.1 825,995 - SO0813 0.52 -0.1 826,054 + SO0813 0.56 -0.1 826,077 - SO0813 0.58 +0.0 826,101 - SO0813 0.60 -0.2 826,124 + SO0813 0.61 -0.5 826,140 - SO0813 0.62 +1.0 826,188 + SO0813 0.66 -0.7 826,216 + SO0813 0.68 -0.2 826,216 + SO0813 0.68 -1.7 826,216 + SO0813 0.68 -0.5 826,216 + SO0813 0.68 -0.8 826,216 + SO0813 0.68 -2.6 826,224 - SO0813 0.68 -1.6 826,224 - SO0813 0.68 +0.3 826,224 - SO0813 0.68 -0.1 826,224 - SO0813 0.68 -0.4 826,224 - SO0813 0.68 +0.2
Or see this region's nucleotide sequence