Experiment: Nickel (II) chloride 0.4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0801 and SO0802 are separated by 349 nucleotides SO0802 and SO0804 are separated by 293 nucleotides SO0804 and SO0805 are separated by 79 nucleotides
SO0801: SO0801 - conserved hypothetical protein (NCBI ptt file), at 813,428 to 814,342
SO0801
SO0802: SO0802 - MATE efflux family protein (NCBI ptt file), at 814,692 to 816,053
SO0802
SO0804: SO0804 - hypothetical protein (NCBI ptt file), at 816,347 to 816,952
SO0804
SO0805: SO0805 - CBS domain protein (NCBI ptt file), at 817,032 to 817,550
SO0805
Position (kb) 814
815
816
817 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 813.701 kb on + strand, within SO0801 at 813.708 kb on + strand, within SO0801 at 813.709 kb on - strand, within SO0801 at 813.860 kb on + strand, within SO0801 at 813.862 kb on - strand, within SO0801 at 813.915 kb on + strand, within SO0801 at 814.028 kb on + strand, within SO0801 at 814.211 kb on + strand, within SO0801 at 814.211 kb on + strand, within SO0801 at 814.249 kb on + strand, within SO0801 at 814.249 kb on + strand, within SO0801 at 814.249 kb on + strand, within SO0801 at 814.257 kb on - strand at 814.309 kb on + strand at 814.430 kb on - strand at 814.506 kb on - strand at 814.506 kb on - strand at 814.550 kb on + strand at 814.552 kb on - strand at 814.582 kb on - strand at 814.594 kb on - strand at 814.651 kb on + strand at 814.683 kb on + strand at 814.691 kb on - strand at 814.691 kb on - strand at 814.691 kb on - strand at 814.691 kb on - strand at 814.711 kb on - strand at 814.713 kb on - strand at 814.721 kb on + strand at 814.737 kb on + strand at 814.857 kb on - strand, within SO0802 at 814.899 kb on + strand, within SO0802 at 814.908 kb on + strand, within SO0802 at 814.908 kb on + strand, within SO0802 at 814.914 kb on - strand, within SO0802 at 814.930 kb on - strand, within SO0802 at 814.942 kb on + strand, within SO0802 at 814.942 kb on + strand, within SO0802 at 814.942 kb on + strand, within SO0802 at 814.989 kb on + strand, within SO0802 at 815.059 kb on + strand, within SO0802 at 815.060 kb on + strand, within SO0802 at 815.060 kb on + strand, within SO0802 at 815.087 kb on - strand, within SO0802 at 815.132 kb on - strand, within SO0802 at 815.176 kb on + strand, within SO0802 at 815.176 kb on + strand, within SO0802 at 815.199 kb on - strand, within SO0802 at 815.210 kb on - strand, within SO0802 at 815.210 kb on - strand, within SO0802 at 815.244 kb on + strand, within SO0802 at 815.284 kb on + strand, within SO0802 at 815.303 kb on + strand, within SO0802 at 815.369 kb on + strand, within SO0802 at 815.377 kb on - strand, within SO0802 at 815.384 kb on + strand, within SO0802 at 815.444 kb on - strand, within SO0802 at 815.486 kb on + strand, within SO0802 at 815.498 kb on + strand, within SO0802 at 815.498 kb on + strand, within SO0802 at 815.506 kb on - strand, within SO0802 at 815.506 kb on - strand, within SO0802 at 815.506 kb on - strand, within SO0802 at 815.506 kb on - strand, within SO0802 at 815.508 kb on + strand, within SO0802 at 815.508 kb on + strand, within SO0802 at 815.508 kb on + strand, within SO0802 at 815.508 kb on + strand, within SO0802 at 815.579 kb on + strand, within SO0802 at 815.619 kb on - strand, within SO0802 at 815.717 kb on - strand, within SO0802 at 815.749 kb on - strand, within SO0802 at 815.865 kb on - strand, within SO0802 at 815.881 kb on + strand, within SO0802 at 815.923 kb on - strand at 815.931 kb on - strand at 816.410 kb on - strand, within SO0804 at 816.479 kb on + strand, within SO0804 at 816.490 kb on + strand, within SO0804 at 816.601 kb on - strand, within SO0804 at 816.643 kb on - strand, within SO0804 at 816.685 kb on - strand, within SO0804 at 816.694 kb on - strand, within SO0804 at 816.814 kb on + strand, within SO0804 at 816.893 kb on + strand at 816.893 kb on + strand at 816.893 kb on + strand at 816.893 kb on + strand at 816.901 kb on - strand at 816.901 kb on - strand at 816.901 kb on - strand at 816.901 kb on - strand at 816.901 kb on - strand at 816.901 kb on - strand at 816.901 kb on - strand at 816.986 kb on + strand at 816.986 kb on + strand at 816.994 kb on - strand at 817.022 kb on + strand at 817.029 kb on + strand at 817.030 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.4 mM remove 813,701 + SO0801 0.30 -1.8 813,708 + SO0801 0.31 -1.9 813,709 - SO0801 0.31 +2.1 813,860 + SO0801 0.47 -0.0 813,862 - SO0801 0.47 +0.9 813,915 + SO0801 0.53 -0.9 814,028 + SO0801 0.66 -0.9 814,211 + SO0801 0.86 -0.9 814,211 + SO0801 0.86 +0.4 814,249 + SO0801 0.90 -1.2 814,249 + SO0801 0.90 -1.3 814,249 + SO0801 0.90 -0.3 814,257 - -0.0 814,309 + -0.6 814,430 - -0.1 814,506 - -0.5 814,506 - +1.2 814,550 + +0.7 814,552 - +0.7 814,582 - -0.3 814,594 - -0.0 814,651 + +0.5 814,683 + -0.0 814,691 - +0.7 814,691 - -0.6 814,691 - -0.0 814,691 - +0.5 814,711 - +1.0 814,713 - +0.7 814,721 + -0.0 814,737 + +0.2 814,857 - SO0802 0.12 -0.1 814,899 + SO0802 0.15 -1.5 814,908 + SO0802 0.16 +0.2 814,908 + SO0802 0.16 -0.9 814,914 - SO0802 0.16 +0.2 814,930 - SO0802 0.17 +0.2 814,942 + SO0802 0.18 -2.0 814,942 + SO0802 0.18 -0.8 814,942 + SO0802 0.18 +1.2 814,989 + SO0802 0.22 +0.3 815,059 + SO0802 0.27 +1.3 815,060 + SO0802 0.27 +0.6 815,060 + SO0802 0.27 -0.1 815,087 - SO0802 0.29 -2.1 815,132 - SO0802 0.32 -3.4 815,176 + SO0802 0.36 -1.3 815,176 + SO0802 0.36 +0.1 815,199 - SO0802 0.37 -0.4 815,210 - SO0802 0.38 -0.6 815,210 - SO0802 0.38 -1.0 815,244 + SO0802 0.41 -0.1 815,284 + SO0802 0.43 -0.6 815,303 + SO0802 0.45 -1.1 815,369 + SO0802 0.50 -0.9 815,377 - SO0802 0.50 +1.3 815,384 + SO0802 0.51 -2.3 815,444 - SO0802 0.55 -0.6 815,486 + SO0802 0.58 -0.0 815,498 + SO0802 0.59 -0.7 815,498 + SO0802 0.59 -1.5 815,506 - SO0802 0.60 -0.8 815,506 - SO0802 0.60 +0.1 815,506 - SO0802 0.60 -0.1 815,506 - SO0802 0.60 -1.3 815,508 + SO0802 0.60 +1.1 815,508 + SO0802 0.60 -1.4 815,508 + SO0802 0.60 -1.9 815,508 + SO0802 0.60 +1.5 815,579 + SO0802 0.65 -1.3 815,619 - SO0802 0.68 -0.1 815,717 - SO0802 0.75 +0.3 815,749 - SO0802 0.78 +0.6 815,865 - SO0802 0.86 +0.0 815,881 + SO0802 0.87 -0.1 815,923 - +0.2 815,931 - +0.6 816,410 - SO0804 0.10 -0.4 816,479 + SO0804 0.22 +1.1 816,490 + SO0804 0.24 +0.7 816,601 - SO0804 0.42 +0.1 816,643 - SO0804 0.49 -1.7 816,685 - SO0804 0.56 -0.6 816,694 - SO0804 0.57 -0.3 816,814 + SO0804 0.77 -0.9 816,893 + -0.7 816,893 + -0.1 816,893 + +0.9 816,893 + -0.8 816,901 - +0.3 816,901 - +0.2 816,901 - +0.1 816,901 - +1.0 816,901 - +0.7 816,901 - -0.0 816,901 - -1.1 816,986 + +1.1 816,986 + -0.2 816,994 - -0.2 817,022 + -0.8 817,029 + -0.4 817,030 - -0.2
Or see this region's nucleotide sequence