Experiment: Nickel (II) chloride 0.4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0336 and SO0337 are separated by 56 nucleotides SO0337 and SO0338 are separated by 187 nucleotides SO0338 and SO0339 are separated by 17 nucleotides SO0339 and ilvE are separated by 226 nucleotides
SO0336: SO0336 - hypothetical Na+/H+ antiporter (NCBI ptt file), at 337,352 to 338,875
SO0336
SO0337: SO0337 - hypothetical translation initiation inhibitor, yjgF family (NCBI ptt file), at 338,932 to 339,288
SO0337
SO0338: SO0338 - hypothetical protein (NCBI ptt file), at 339,476 to 339,811
SO0338
SO0339: SO0339 - hypothetical transcriptional antiterminator (NCBI ptt file), at 339,829 to 340,101
SO0339
SO0340: ilvE - branched-chain amino acid aminotransferase (NCBI ptt file), at 340,328 to 341,419
ilvE
Position (kb) 339
340
341 Strain fitness (log2 ratio) -2
-1
0
1
2 at 338.833 kb on + strand at 338.833 kb on + strand at 338.833 kb on + strand at 338.833 kb on + strand at 338.833 kb on + strand at 338.908 kb on - strand at 338.962 kb on + strand at 338.970 kb on - strand, within SO0337 at 338.970 kb on - strand, within SO0337 at 338.970 kb on - strand, within SO0337 at 338.970 kb on - strand, within SO0337 at 338.970 kb on - strand, within SO0337 at 339.010 kb on - strand, within SO0337 at 339.038 kb on + strand, within SO0337 at 339.069 kb on + strand, within SO0337 at 339.111 kb on + strand, within SO0337 at 339.119 kb on - strand, within SO0337 at 339.127 kb on - strand, within SO0337 at 339.237 kb on + strand, within SO0337 at 339.395 kb on - strand at 339.395 kb on - strand at 339.395 kb on - strand at 339.401 kb on - strand at 339.401 kb on - strand at 339.401 kb on - strand at 339.401 kb on - strand at 339.427 kb on + strand at 339.525 kb on + strand, within SO0338 at 339.656 kb on + strand, within SO0338 at 339.679 kb on - strand, within SO0338 at 339.689 kb on + strand, within SO0338 at 339.691 kb on - strand, within SO0338 at 339.702 kb on - strand, within SO0338 at 339.779 kb on - strand at 339.897 kb on + strand, within SO0339 at 339.975 kb on - strand, within SO0339 at 339.992 kb on + strand, within SO0339 at 340.000 kb on - strand, within SO0339 at 340.000 kb on - strand, within SO0339 at 340.002 kb on - strand, within SO0339 at 340.045 kb on + strand, within SO0339 at 340.050 kb on + strand, within SO0339 at 340.156 kb on + strand at 340.187 kb on + strand at 340.197 kb on - strand at 340.230 kb on + strand at 340.242 kb on + strand at 340.286 kb on + strand at 340.301 kb on + strand at 340.326 kb on - strand at 340.411 kb on + strand at 340.411 kb on + strand at 340.411 kb on + strand at 340.419 kb on - strand at 340.419 kb on - strand at 340.419 kb on - strand at 340.519 kb on + strand, within ilvE at 340.732 kb on - strand, within ilvE at 340.774 kb on + strand, within ilvE at 340.808 kb on - strand, within ilvE at 340.905 kb on + strand, within ilvE at 340.970 kb on - strand, within ilvE at 340.972 kb on + strand, within ilvE at 341.026 kb on + strand, within ilvE at 341.044 kb on - strand, within ilvE
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.4 mM remove 338,833 + +0.7 338,833 + +0.5 338,833 + +0.3 338,833 + -0.8 338,833 + +0.2 338,908 - +0.5 338,962 + +1.6 338,970 - SO0337 0.11 +0.4 338,970 - SO0337 0.11 -0.8 338,970 - SO0337 0.11 +0.9 338,970 - SO0337 0.11 -0.2 338,970 - SO0337 0.11 -1.8 339,010 - SO0337 0.22 -0.1 339,038 + SO0337 0.30 +1.6 339,069 + SO0337 0.38 +0.4 339,111 + SO0337 0.50 +0.8 339,119 - SO0337 0.52 +0.6 339,127 - SO0337 0.55 +0.7 339,237 + SO0337 0.85 +0.6 339,395 - -1.3 339,395 - -0.2 339,395 - -1.4 339,401 - +0.1 339,401 - +0.4 339,401 - +0.2 339,401 - +0.7 339,427 + -0.4 339,525 + SO0338 0.15 +0.1 339,656 + SO0338 0.54 -1.8 339,679 - SO0338 0.60 +0.1 339,689 + SO0338 0.63 +0.4 339,691 - SO0338 0.64 -0.2 339,702 - SO0338 0.67 -0.3 339,779 - +0.1 339,897 + SO0339 0.25 -1.3 339,975 - SO0339 0.53 -0.6 339,992 + SO0339 0.60 -0.7 340,000 - SO0339 0.63 +0.4 340,000 - SO0339 0.63 -0.6 340,002 - SO0339 0.63 -0.5 340,045 + SO0339 0.79 +0.2 340,050 + SO0339 0.81 -0.4 340,156 + -1.8 340,187 + -1.1 340,197 - -1.0 340,230 + -0.2 340,242 + -0.0 340,286 + +0.8 340,301 + -0.9 340,326 - -0.8 340,411 + +1.2 340,411 + -0.2 340,411 + +0.7 340,419 - +2.3 340,419 - -0.3 340,419 - +1.1 340,519 + ilvE SO0340 0.17 -1.1 340,732 - ilvE SO0340 0.37 +1.5 340,774 + ilvE SO0340 0.41 +0.6 340,808 - ilvE SO0340 0.44 +0.9 340,905 + ilvE SO0340 0.53 +0.4 340,970 - ilvE SO0340 0.59 +1.2 340,972 + ilvE SO0340 0.59 +0.9 341,026 + ilvE SO0340 0.64 -0.1 341,044 - ilvE SO0340 0.66 +1.5
Or see this region's nucleotide sequence