Experiment: Nickel (II) chloride 0.4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0301 and SO0301.1 are separated by 214 nucleotides SO0301.1 and SO0302 are separated by 115 nucleotides SO0302 and SO0304 are separated by 908 nucleotides
SO0301: SO0301 - hypothetical methyltransferase (NCBI ptt file), at 306,578 to 307,423
SO0301
SO0301.1: SO0301.1 - conserved hypothetical protein (NCBI ptt file), at 307,638 to 307,859
SO0301.1
SO0302: SO0302 - hypothetical protein (NCBI ptt file), at 307,975 to 308,481
SO0302
SO0304: SO0304 - hypothetical endonuclease (NCBI ptt file), at 309,390 to 310,352
SO0304
Position (kb) 307
308
309 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 307.111 kb on - strand, within SO0301 at 307.140 kb on + strand, within SO0301 at 307.195 kb on - strand, within SO0301 at 307.233 kb on - strand, within SO0301 at 307.440 kb on + strand at 307.463 kb on - strand at 307.949 kb on + strand at 307.949 kb on + strand at 307.949 kb on + strand at 307.957 kb on - strand at 307.957 kb on - strand at 307.957 kb on - strand at 307.967 kb on - strand at 308.165 kb on + strand, within SO0302 at 308.166 kb on + strand, within SO0302 at 308.166 kb on + strand, within SO0302 at 308.166 kb on + strand, within SO0302 at 308.166 kb on + strand, within SO0302 at 308.173 kb on - strand, within SO0302 at 308.174 kb on - strand, within SO0302 at 308.174 kb on - strand, within SO0302 at 308.179 kb on - strand, within SO0302 at 308.196 kb on - strand, within SO0302 at 308.202 kb on - strand, within SO0302 at 308.215 kb on - strand, within SO0302 at 308.215 kb on - strand, within SO0302 at 308.278 kb on - strand, within SO0302 at 308.295 kb on - strand, within SO0302 at 308.304 kb on - strand, within SO0302 at 308.332 kb on + strand, within SO0302 at 308.332 kb on + strand, within SO0302 at 308.340 kb on - strand, within SO0302 at 308.366 kb on - strand, within SO0302 at 308.400 kb on - strand, within SO0302 at 308.504 kb on + strand at 308.504 kb on + strand at 308.517 kb on - strand at 308.593 kb on - strand at 308.685 kb on + strand at 308.685 kb on - strand at 308.715 kb on + strand at 308.730 kb on - strand at 308.767 kb on - strand at 308.783 kb on - strand at 308.802 kb on + strand at 308.874 kb on - strand at 308.874 kb on - strand at 309.266 kb on - strand at 309.266 kb on - strand at 309.266 kb on - strand at 309.327 kb on + strand at 309.327 kb on + strand at 309.335 kb on - strand at 309.335 kb on - strand at 309.382 kb on + strand at 309.390 kb on - strand at 309.393 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.4 mM remove 307,111 - SO0301 0.63 +1.3 307,140 + SO0301 0.66 +1.0 307,195 - SO0301 0.73 +1.8 307,233 - SO0301 0.77 +1.6 307,440 + -2.0 307,463 - -0.7 307,949 + +0.2 307,949 + +0.1 307,949 + -0.1 307,957 - -1.1 307,957 - +0.8 307,957 - -0.0 307,967 - +1.1 308,165 + SO0302 0.37 +0.4 308,166 + SO0302 0.38 -0.0 308,166 + SO0302 0.38 -1.0 308,166 + SO0302 0.38 -0.5 308,166 + SO0302 0.38 +0.4 308,173 - SO0302 0.39 +1.7 308,174 - SO0302 0.39 +0.4 308,174 - SO0302 0.39 +0.1 308,179 - SO0302 0.40 -2.8 308,196 - SO0302 0.44 -1.4 308,202 - SO0302 0.45 -0.5 308,215 - SO0302 0.47 +0.6 308,215 - SO0302 0.47 -0.3 308,278 - SO0302 0.60 +0.3 308,295 - SO0302 0.63 +0.6 308,304 - SO0302 0.65 -1.2 308,332 + SO0302 0.70 +0.3 308,332 + SO0302 0.70 +0.8 308,340 - SO0302 0.72 -0.7 308,366 - SO0302 0.77 +0.0 308,400 - SO0302 0.84 +1.6 308,504 + +0.9 308,504 + +0.0 308,517 - -0.5 308,593 - +0.8 308,685 + +0.1 308,685 - +0.5 308,715 + -0.2 308,730 - +0.3 308,767 - -1.2 308,783 - +0.5 308,802 + -1.6 308,874 - -1.9 308,874 - +0.7 309,266 - -1.1 309,266 - -0.2 309,266 - +0.0 309,327 + +1.0 309,327 + +0.6 309,335 - +0.0 309,335 - -0.3 309,382 + +0.2 309,390 - -1.0 309,393 + +0.4
Or see this region's nucleotide sequence