Experiment: L-Citrulline as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_907 and HP15_908 are separated by 62 nucleotides HP15_908 and HP15_909 are separated by 33 nucleotides HP15_909 and HP15_910 are separated by 27 nucleotides HP15_910 and HP15_911 are separated by 3 nucleotides
HP15_907: HP15_907 - acyl-CoA dehydrogenase domain protein, at 919,118 to 920,284
_907
HP15_908: HP15_908 - enoyl-CoA hydratase/isomerase, at 920,347 to 921,126
_908
HP15_909: HP15_909 - enoyl-CoA hydratase/isomerase family protein, at 921,160 to 922,230
_909
HP15_910: HP15_910 - 3-hydroxyisobutyrate dehydrogenase, at 922,258 to 923,145
_910
HP15_911: HP15_911 - conserved hypothetical protein, at 923,149 to 923,481
_911
Position (kb) 921
922
923 Strain fitness (log2 ratio) -1
0
1
2
3 at 920.609 kb on + strand, within HP15_908 at 920.763 kb on - strand, within HP15_908 at 921.160 kb on - strand at 921.297 kb on + strand, within HP15_909 at 921.385 kb on - strand, within HP15_909 at 921.390 kb on - strand, within HP15_909 at 921.511 kb on + strand, within HP15_909 at 921.616 kb on - strand, within HP15_909 at 921.688 kb on - strand, within HP15_909 at 921.761 kb on + strand, within HP15_909 at 921.818 kb on - strand, within HP15_909 at 921.818 kb on - strand, within HP15_909 at 921.818 kb on - strand, within HP15_909 at 921.925 kb on - strand, within HP15_909 at 921.925 kb on - strand, within HP15_909 at 921.949 kb on - strand, within HP15_909 at 922.353 kb on + strand, within HP15_910 at 922.496 kb on - strand, within HP15_910 at 922.647 kb on - strand, within HP15_910 at 922.673 kb on + strand, within HP15_910 at 922.940 kb on - strand, within HP15_910 at 922.996 kb on + strand, within HP15_910 at 923.078 kb on - strand at 923.089 kb on - strand at 923.100 kb on - strand at 923.130 kb on + strand at 923.130 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline as (N) remove 920,609 + HP15_908 0.34 +0.2 920,763 - HP15_908 0.53 +1.1 921,160 - -1.0 921,297 + HP15_909 0.13 +3.0 921,385 - HP15_909 0.21 +1.8 921,390 - HP15_909 0.21 -0.5 921,511 + HP15_909 0.33 -0.7 921,616 - HP15_909 0.43 -0.4 921,688 - HP15_909 0.49 +1.9 921,761 + HP15_909 0.56 +1.2 921,818 - HP15_909 0.61 +1.7 921,818 - HP15_909 0.61 +0.7 921,818 - HP15_909 0.61 +1.4 921,925 - HP15_909 0.71 -0.2 921,925 - HP15_909 0.71 -0.7 921,949 - HP15_909 0.74 -0.9 922,353 + HP15_910 0.11 +1.8 922,496 - HP15_910 0.27 +0.8 922,647 - HP15_910 0.44 +0.6 922,673 + HP15_910 0.47 -0.2 922,940 - HP15_910 0.77 +0.8 922,996 + HP15_910 0.83 +1.9 923,078 - +2.0 923,089 - -0.2 923,100 - +1.9 923,130 + -0.6 923,130 + -0.3
Or see this region's nucleotide sequence