Experiment: L-Citrulline as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_774 and HP15_775 are separated by 56 nucleotides HP15_775 and HP15_776 are separated by 15 nucleotides HP15_776 and HP15_777 are separated by 67 nucleotides
HP15_774: HP15_774 - L-aspartate oxidase, at 783,869 to 785,494
_774
HP15_775: HP15_775 - RNA polymerase sigma-70 RpoE type, at 785,551 to 786,294
_775
HP15_776: HP15_776 - sigma factor algU negative regulatory protein MucA, at 786,310 to 786,870
_776
HP15_777: HP15_777 - sigma E regulatory protein, MucB/RseB, at 786,938 to 787,912
_777
Position (kb) 785
786
787 Strain fitness (log2 ratio) -2
-1
0
1
2 at 784.706 kb on - strand, within HP15_774 at 785.027 kb on - strand, within HP15_774 at 785.057 kb on + strand, within HP15_774 at 785.070 kb on - strand, within HP15_774 at 785.110 kb on + strand, within HP15_774 at 785.154 kb on + strand, within HP15_774 at 785.236 kb on - strand, within HP15_774 at 785.254 kb on - strand, within HP15_774 at 785.254 kb on - strand, within HP15_774 at 785.306 kb on + strand, within HP15_774 at 785.390 kb on - strand at 785.526 kb on - strand at 785.557 kb on - strand at 785.569 kb on + strand at 785.586 kb on - strand at 785.631 kb on + strand, within HP15_775 at 785.663 kb on + strand, within HP15_775 at 785.681 kb on - strand, within HP15_775 at 785.854 kb on + strand, within HP15_775 at 785.924 kb on + strand, within HP15_775 at 786.002 kb on - strand, within HP15_775 at 786.035 kb on + strand, within HP15_775 at 786.043 kb on - strand, within HP15_775 at 786.077 kb on + strand, within HP15_775 at 786.201 kb on - strand, within HP15_775 at 786.220 kb on - strand at 786.251 kb on - strand at 786.703 kb on + strand, within HP15_776 at 786.706 kb on - strand, within HP15_776 at 786.788 kb on - strand, within HP15_776 at 786.795 kb on + strand, within HP15_776 at 786.803 kb on - strand, within HP15_776 at 786.803 kb on - strand, within HP15_776
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline as (N) remove 784,706 - HP15_774 0.51 -1.1 785,027 - HP15_774 0.71 -2.2 785,057 + HP15_774 0.73 -1.8 785,070 - HP15_774 0.74 +0.7 785,110 + HP15_774 0.76 -2.4 785,154 + HP15_774 0.79 -1.7 785,236 - HP15_774 0.84 +0.5 785,254 - HP15_774 0.85 -1.2 785,254 - HP15_774 0.85 -0.2 785,306 + HP15_774 0.88 +1.2 785,390 - -1.3 785,526 - -1.5 785,557 - +0.7 785,569 + -0.4 785,586 - +1.2 785,631 + HP15_775 0.11 -0.7 785,663 + HP15_775 0.15 -0.0 785,681 - HP15_775 0.17 +1.4 785,854 + HP15_775 0.41 +0.3 785,924 + HP15_775 0.50 +1.7 786,002 - HP15_775 0.61 -0.1 786,035 + HP15_775 0.65 +2.6 786,043 - HP15_775 0.66 +1.6 786,077 + HP15_775 0.71 +0.4 786,201 - HP15_775 0.87 -0.6 786,220 - +0.1 786,251 - +0.8 786,703 + HP15_776 0.70 +2.1 786,706 - HP15_776 0.71 -1.1 786,788 - HP15_776 0.85 -0.0 786,795 + HP15_776 0.86 -0.2 786,803 - HP15_776 0.88 -0.7 786,803 - HP15_776 0.88 -1.3
Or see this region's nucleotide sequence