Strain Fitness in Marinobacter adhaerens HP15 around HP15_59

Experiment: L-Citrulline as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_57 and HP15_58 are separated by 45 nucleotidesHP15_58 and HP15_59 are separated by 91 nucleotidesHP15_59 and HP15_60 are separated by 13 nucleotidesHP15_60 and HP15_61 are separated by 22 nucleotides HP15_57: HP15_57 - conserved hypothetical protein, at 62,494 to 63,393 _57 HP15_58: HP15_58 - GTP cyclohydrolase 1, at 63,439 to 64,068 _58 HP15_59: HP15_59 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 64,160 to 64,906 _59 HP15_60: HP15_60 - transcription regulator, AsnC-type, at 64,920 to 65,507 _60 HP15_61: HP15_61 - chain A, alpha-keto acid dehydrogenase-like protein, at 65,530 to 66,759 _61 Position (kb) 64 65Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 63.201 kb on + strand, within HP15_57at 63.313 kb on - strandat 63.343 kb on - strandat 63.461 kb on - strandat 63.479 kb on + strandat 63.505 kb on + strand, within HP15_58at 63.569 kb on - strand, within HP15_58at 63.585 kb on + strand, within HP15_58at 63.593 kb on - strand, within HP15_58at 63.595 kb on + strand, within HP15_58at 63.601 kb on - strand, within HP15_58at 63.775 kb on + strand, within HP15_58at 63.854 kb on - strand, within HP15_58at 63.870 kb on - strand, within HP15_58at 63.870 kb on - strand, within HP15_58at 63.870 kb on - strand, within HP15_58at 63.896 kb on + strand, within HP15_58at 63.896 kb on + strand, within HP15_58at 63.904 kb on - strand, within HP15_58at 63.914 kb on + strand, within HP15_58at 63.914 kb on - strand, within HP15_58at 63.933 kb on + strand, within HP15_58at 63.936 kb on - strand, within HP15_58at 63.985 kb on + strand, within HP15_58at 63.992 kb on + strand, within HP15_58at 63.993 kb on - strand, within HP15_58at 63.997 kb on + strand, within HP15_58at 64.000 kb on - strand, within HP15_58at 64.000 kb on - strand, within HP15_58at 64.005 kb on - strand, within HP15_58at 64.031 kb on - strandat 64.063 kb on + strandat 64.066 kb on - strandat 64.066 kb on - strandat 64.067 kb on + strandat 64.071 kb on - strandat 64.139 kb on + strandat 64.141 kb on + strandat 64.141 kb on + strandat 64.142 kb on - strandat 64.149 kb on - strandat 64.196 kb on + strandat 64.229 kb on - strandat 64.229 kb on - strandat 64.274 kb on + strand, within HP15_59at 64.282 kb on - strand, within HP15_59at 64.282 kb on - strand, within HP15_59at 64.282 kb on - strand, within HP15_59at 64.307 kb on + strand, within HP15_59at 64.310 kb on - strand, within HP15_59at 64.351 kb on - strand, within HP15_59at 64.426 kb on + strand, within HP15_59at 64.463 kb on - strand, within HP15_59at 64.517 kb on + strand, within HP15_59at 64.525 kb on - strand, within HP15_59at 64.548 kb on + strand, within HP15_59at 64.548 kb on + strand, within HP15_59at 64.548 kb on + strand, within HP15_59at 64.548 kb on + strand, within HP15_59at 64.564 kb on - strand, within HP15_59at 64.584 kb on - strand, within HP15_59at 64.623 kb on - strand, within HP15_59at 64.627 kb on - strand, within HP15_59at 64.692 kb on + strand, within HP15_59at 64.692 kb on + strand, within HP15_59at 64.692 kb on + strand, within HP15_59at 64.700 kb on - strand, within HP15_59at 64.700 kb on - strand, within HP15_59at 64.700 kb on - strand, within HP15_59at 64.700 kb on - strand, within HP15_59at 64.700 kb on - strand, within HP15_59at 64.795 kb on + strand, within HP15_59at 64.803 kb on - strand, within HP15_59at 64.839 kb on - strandat 64.847 kb on - strandat 64.849 kb on + strandat 64.880 kb on + strandat 64.900 kb on + strandat 64.908 kb on - strandat 64.908 kb on - strandat 64.908 kb on - strandat 64.986 kb on - strand, within HP15_60at 65.030 kb on + strand, within HP15_60at 65.036 kb on - strand, within HP15_60at 65.088 kb on + strand, within HP15_60at 65.118 kb on - strand, within HP15_60at 65.278 kb on + strand, within HP15_60at 65.286 kb on - strand, within HP15_60at 65.288 kb on + strand, within HP15_60at 65.320 kb on + strand, within HP15_60at 65.320 kb on + strand, within HP15_60at 65.329 kb on - strand, within HP15_60at 65.329 kb on - strand, within HP15_60at 65.339 kb on - strand, within HP15_60at 65.561 kb on + strandat 65.647 kb on - strandat 65.687 kb on - strand, within HP15_61at 65.760 kb on + strand, within HP15_61at 65.767 kb on + strand, within HP15_61at 65.876 kb on - strand, within HP15_61at 65.896 kb on - strand, within HP15_61at 65.898 kb on + strand, within HP15_61at 65.906 kb on - strand, within HP15_61at 65.906 kb on - strand, within HP15_61at 65.906 kb on - strand, within HP15_61

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline as (N)
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63,201 + HP15_57 0.79 +2.1
63,313 - +1.7
63,343 - -0.7
63,461 - +1.7
63,479 + -0.4
63,505 + HP15_58 0.10 -2.4
63,569 - HP15_58 0.21 +0.9
63,585 + HP15_58 0.23 +0.5
63,593 - HP15_58 0.24 +0.1
63,595 + HP15_58 0.25 +0.8
63,601 - HP15_58 0.26 -0.4
63,775 + HP15_58 0.53 -1.6
63,854 - HP15_58 0.66 -0.0
63,870 - HP15_58 0.68 +1.2
63,870 - HP15_58 0.68 -0.1
63,870 - HP15_58 0.68 -0.6
63,896 + HP15_58 0.73 -0.6
63,896 + HP15_58 0.73 +0.6
63,904 - HP15_58 0.74 -1.7
63,914 + HP15_58 0.75 -0.4
63,914 - HP15_58 0.75 +1.1
63,933 + HP15_58 0.78 -0.1
63,936 - HP15_58 0.79 -0.2
63,985 + HP15_58 0.87 -0.5
63,992 + HP15_58 0.88 -0.7
63,993 - HP15_58 0.88 +1.2
63,997 + HP15_58 0.89 -0.7
64,000 - HP15_58 0.89 -1.1
64,000 - HP15_58 0.89 +1.4
64,005 - HP15_58 0.90 -0.8
64,031 - +0.6
64,063 + -0.8
64,066 - -0.6
64,066 - +1.7
64,067 + +1.2
64,071 - -0.6
64,139 + -0.8
64,141 + -0.5
64,141 + -0.9
64,142 - -0.6
64,149 - -1.0
64,196 + +0.1
64,229 - -0.4
64,229 - -0.5
64,274 + HP15_59 0.15 +2.1
64,282 - HP15_59 0.16 +2.1
64,282 - HP15_59 0.16 +0.4
64,282 - HP15_59 0.16 -0.1
64,307 + HP15_59 0.20 +1.8
64,310 - HP15_59 0.20 +1.7
64,351 - HP15_59 0.26 -0.5
64,426 + HP15_59 0.36 -0.1
64,463 - HP15_59 0.41 +0.6
64,517 + HP15_59 0.48 -0.1
64,525 - HP15_59 0.49 +1.2
64,548 + HP15_59 0.52 +0.2
64,548 + HP15_59 0.52 +1.1
64,548 + HP15_59 0.52 +0.4
64,548 + HP15_59 0.52 +1.4
64,564 - HP15_59 0.54 -0.4
64,584 - HP15_59 0.57 +1.9
64,623 - HP15_59 0.62 +1.8
64,627 - HP15_59 0.63 -0.4
64,692 + HP15_59 0.71 +0.8
64,692 + HP15_59 0.71 +0.2
64,692 + HP15_59 0.71 +0.1
64,700 - HP15_59 0.72 -0.3
64,700 - HP15_59 0.72 +1.3
64,700 - HP15_59 0.72 -0.8
64,700 - HP15_59 0.72 -1.4
64,700 - HP15_59 0.72 -0.3
64,795 + HP15_59 0.85 +0.2
64,803 - HP15_59 0.86 -0.4
64,839 - -0.5
64,847 - -0.2
64,849 + -0.1
64,880 + -0.1
64,900 + -0.0
64,908 - +0.5
64,908 - +1.2
64,908 - +0.3
64,986 - HP15_60 0.11 +1.5
65,030 + HP15_60 0.19 +0.4
65,036 - HP15_60 0.20 +2.1
65,088 + HP15_60 0.29 -0.0
65,118 - HP15_60 0.34 -0.3
65,278 + HP15_60 0.61 -0.7
65,286 - HP15_60 0.62 +1.3
65,288 + HP15_60 0.63 +1.4
65,320 + HP15_60 0.68 -0.5
65,320 + HP15_60 0.68 +0.2
65,329 - HP15_60 0.70 -0.1
65,329 - HP15_60 0.70 -0.4
65,339 - HP15_60 0.71 +1.4
65,561 + +1.4
65,647 - +3.8
65,687 - HP15_61 0.13 -0.6
65,760 + HP15_61 0.19 +1.9
65,767 + HP15_61 0.19 +0.6
65,876 - HP15_61 0.28 +1.2
65,896 - HP15_61 0.30 -1.2
65,898 + HP15_61 0.30 +2.6
65,906 - HP15_61 0.31 +0.8
65,906 - HP15_61 0.31 -0.7
65,906 - HP15_61 0.31 -0.8

Or see this region's nucleotide sequence