Experiment: L-Citrulline as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_549 and HP15_550 are separated by 45 nucleotides HP15_550 and HP15_551 overlap by 1 nucleotides HP15_551 and HP15_553 are separated by 24 nucleotides
HP15_549: HP15_549 - stringent starvation protein B, at 569,955 to 570,398
_549
HP15_550: HP15_550 - phosphoheptose isomerase, at 570,444 to 571,046
_550
HP15_551: HP15_551 - hypothetical protein, at 571,046 to 571,411
_551
HP15_553: HP15_553 - LppC family lipoprotein, at 571,436 to 573,097
_553
Position (kb) 571
572 Strain fitness (log2 ratio) -1
0
1
2 at 570.094 kb on - strand, within HP15_549 at 570.273 kb on + strand, within HP15_549 at 570.288 kb on - strand, within HP15_549 at 570.378 kb on + strand at 570.490 kb on - strand at 570.508 kb on + strand, within HP15_550 at 570.508 kb on + strand, within HP15_550 at 570.516 kb on - strand, within HP15_550 at 570.701 kb on - strand, within HP15_550 at 570.725 kb on - strand, within HP15_550 at 570.806 kb on + strand, within HP15_550 at 571.123 kb on - strand, within HP15_551 at 571.262 kb on + strand, within HP15_551 at 571.338 kb on - strand, within HP15_551 at 571.358 kb on + strand, within HP15_551 at 571.376 kb on - strand at 571.470 kb on + strand at 571.478 kb on - strand at 571.510 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline as (N) remove 570,094 - HP15_549 0.31 -0.3 570,273 + HP15_549 0.72 -1.2 570,288 - HP15_549 0.75 +0.1 570,378 + +1.2 570,490 - -0.1 570,508 + HP15_550 0.11 +0.9 570,508 + HP15_550 0.11 +2.1 570,516 - HP15_550 0.12 +1.1 570,701 - HP15_550 0.43 +2.5 570,725 - HP15_550 0.47 +1.9 570,806 + HP15_550 0.60 +0.2 571,123 - HP15_551 0.21 +1.2 571,262 + HP15_551 0.59 +0.5 571,338 - HP15_551 0.80 -0.3 571,358 + HP15_551 0.85 +1.9 571,376 - -1.5 571,470 + +0.2 571,478 - +1.8 571,510 + -0.0
Or see this region's nucleotide sequence