Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g111

Experiment: L-Citrulline as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_p187g110 and HP15_p187g111 are separated by 161 nucleotidesHP15_p187g111 and HP15_p187g112 are separated by 14 nucleotidesHP15_p187g112 and HP15_p187g113 are separated by 253 nucleotides HP15_p187g110: HP15_p187g110 - conserved hypothetical protein, at 103,789 to 105,543 _p187g110 HP15_p187g111: HP15_p187g111 - PKD domain containing protein, at 105,705 to 108,227 _p187g111 HP15_p187g112: HP15_p187g112 - lipoprotein, at 108,242 to 108,814 _p187g112 HP15_p187g113: HP15_p187g113 - metallophosphoesterase-like protein, at 109,068 to 111,152 _p187g113 Position (kb) 105 106 107 108 109Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 104.735 kb on + strand, within HP15_p187g110at 104.773 kb on - strand, within HP15_p187g110at 104.773 kb on - strand, within HP15_p187g110at 104.796 kb on + strand, within HP15_p187g110at 104.854 kb on - strand, within HP15_p187g110at 104.854 kb on - strand, within HP15_p187g110at 104.864 kb on - strand, within HP15_p187g110at 104.890 kb on + strand, within HP15_p187g110at 104.890 kb on + strand, within HP15_p187g110at 104.914 kb on - strand, within HP15_p187g110at 105.003 kb on - strand, within HP15_p187g110at 105.011 kb on - strand, within HP15_p187g110at 105.077 kb on - strand, within HP15_p187g110at 105.077 kb on - strand, within HP15_p187g110at 105.080 kb on + strand, within HP15_p187g110at 105.216 kb on + strand, within HP15_p187g110at 105.216 kb on + strand, within HP15_p187g110at 105.225 kb on - strand, within HP15_p187g110at 105.225 kb on - strand, within HP15_p187g110at 105.282 kb on - strand, within HP15_p187g110at 105.335 kb on + strand, within HP15_p187g110at 105.335 kb on + strand, within HP15_p187g110at 105.335 kb on + strand, within HP15_p187g110at 105.335 kb on + strand, within HP15_p187g110at 105.335 kb on + strand, within HP15_p187g110at 105.335 kb on + strand, within HP15_p187g110at 105.335 kb on + strand, within HP15_p187g110at 105.335 kb on + strand, within HP15_p187g110at 105.335 kb on + strand, within HP15_p187g110at 105.335 kb on + strand, within HP15_p187g110at 105.335 kb on + strand, within HP15_p187g110at 105.335 kb on + strand, within HP15_p187g110at 105.335 kb on + strand, within HP15_p187g110at 105.335 kb on + strand, within HP15_p187g110at 105.343 kb on + strand, within HP15_p187g110at 105.343 kb on - strand, within HP15_p187g110at 105.343 kb on - strand, within HP15_p187g110at 105.343 kb on - strand, within HP15_p187g110at 105.343 kb on - strand, within HP15_p187g110at 105.343 kb on - strand, within HP15_p187g110at 105.343 kb on - strand, within HP15_p187g110at 105.343 kb on - strand, within HP15_p187g110at 105.343 kb on - strand, within HP15_p187g110at 105.343 kb on - strand, within HP15_p187g110at 105.343 kb on - strand, within HP15_p187g110at 105.343 kb on - strand, within HP15_p187g110at 105.343 kb on - strand, within HP15_p187g110at 105.351 kb on - strand, within HP15_p187g110at 105.456 kb on + strandat 105.475 kb on + strandat 105.527 kb on - strandat 105.535 kb on + strandat 105.543 kb on - strandat 105.543 kb on - strandat 105.547 kb on + strandat 105.556 kb on + strandat 105.556 kb on + strandat 105.556 kb on + strandat 105.578 kb on + strandat 105.580 kb on + strandat 105.586 kb on - strandat 105.588 kb on - strandat 105.591 kb on - strandat 105.633 kb on + strandat 105.645 kb on - strandat 105.681 kb on - strandat 105.731 kb on + strandat 105.731 kb on + strandat 105.777 kb on + strandat 105.832 kb on + strandat 105.853 kb on + strandat 105.863 kb on + strandat 105.871 kb on - strandat 105.871 kb on - strandat 105.871 kb on - strandat 105.874 kb on + strandat 105.875 kb on + strandat 105.882 kb on + strandat 105.883 kb on - strandat 105.884 kb on + strandat 105.884 kb on + strandat 105.884 kb on + strandat 105.884 kb on + strandat 105.884 kb on + strandat 105.892 kb on - strandat 105.892 kb on - strandat 105.892 kb on - strandat 105.892 kb on - strandat 105.892 kb on - strandat 105.892 kb on - strandat 105.980 kb on + strand, within HP15_p187g111at 105.983 kb on - strand, within HP15_p187g111at 105.983 kb on - strand, within HP15_p187g111at 105.988 kb on - strand, within HP15_p187g111at 105.993 kb on - strand, within HP15_p187g111at 106.003 kb on + strand, within HP15_p187g111at 106.004 kb on + strand, within HP15_p187g111at 106.005 kb on + strand, within HP15_p187g111at 106.011 kb on + strand, within HP15_p187g111at 106.012 kb on - strand, within HP15_p187g111at 106.019 kb on - strand, within HP15_p187g111at 106.019 kb on - strand, within HP15_p187g111at 106.019 kb on - strand, within HP15_p187g111at 106.019 kb on - strand, within HP15_p187g111at 106.072 kb on + strand, within HP15_p187g111at 106.117 kb on + strand, within HP15_p187g111at 106.159 kb on - strand, within HP15_p187g111at 106.172 kb on - strand, within HP15_p187g111at 106.181 kb on + strand, within HP15_p187g111at 106.183 kb on + strand, within HP15_p187g111at 106.212 kb on + strand, within HP15_p187g111at 106.221 kb on - strand, within HP15_p187g111at 106.268 kb on - strand, within HP15_p187g111at 106.286 kb on + strand, within HP15_p187g111at 106.286 kb on + strand, within HP15_p187g111at 106.286 kb on + strand, within HP15_p187g111at 106.292 kb on + strand, within HP15_p187g111at 106.292 kb on + strand, within HP15_p187g111at 106.294 kb on - strand, within HP15_p187g111at 106.294 kb on - strand, within HP15_p187g111at 106.294 kb on - strand, within HP15_p187g111at 106.294 kb on - strand, within HP15_p187g111at 106.300 kb on - strand, within HP15_p187g111at 106.300 kb on - strand, within HP15_p187g111at 106.349 kb on - strand, within HP15_p187g111at 106.376 kb on + strand, within HP15_p187g111at 106.429 kb on - strand, within HP15_p187g111at 106.443 kb on + strand, within HP15_p187g111at 106.591 kb on + strand, within HP15_p187g111at 106.646 kb on + strand, within HP15_p187g111at 106.725 kb on + strand, within HP15_p187g111at 106.797 kb on + strand, within HP15_p187g111at 106.817 kb on - strand, within HP15_p187g111at 106.819 kb on - strand, within HP15_p187g111at 106.882 kb on - strand, within HP15_p187g111at 106.882 kb on - strand, within HP15_p187g111at 106.900 kb on + strand, within HP15_p187g111at 106.908 kb on + strand, within HP15_p187g111at 106.920 kb on - strand, within HP15_p187g111at 106.936 kb on + strand, within HP15_p187g111at 107.005 kb on + strand, within HP15_p187g111at 107.013 kb on + strand, within HP15_p187g111at 107.015 kb on - strand, within HP15_p187g111at 107.026 kb on + strand, within HP15_p187g111at 107.036 kb on - strand, within HP15_p187g111at 107.058 kb on + strand, within HP15_p187g111at 107.079 kb on - strand, within HP15_p187g111at 107.085 kb on + strand, within HP15_p187g111at 107.085 kb on + strand, within HP15_p187g111at 107.092 kb on + strand, within HP15_p187g111at 107.139 kb on - strand, within HP15_p187g111at 107.184 kb on - strand, within HP15_p187g111at 107.200 kb on + strand, within HP15_p187g111at 107.305 kb on + strand, within HP15_p187g111at 107.305 kb on + strand, within HP15_p187g111at 107.323 kb on - strand, within HP15_p187g111at 107.371 kb on - strand, within HP15_p187g111at 107.410 kb on + strand, within HP15_p187g111at 107.535 kb on + strand, within HP15_p187g111at 107.543 kb on - strand, within HP15_p187g111at 107.575 kb on - strand, within HP15_p187g111at 107.668 kb on - strand, within HP15_p187g111at 107.668 kb on - strand, within HP15_p187g111at 107.690 kb on + strand, within HP15_p187g111at 107.690 kb on - strand, within HP15_p187g111at 107.765 kb on - strand, within HP15_p187g111at 107.765 kb on - strand, within HP15_p187g111at 107.765 kb on - strand, within HP15_p187g111at 107.765 kb on - strand, within HP15_p187g111at 107.765 kb on - strand, within HP15_p187g111at 107.765 kb on - strand, within HP15_p187g111at 107.790 kb on + strand, within HP15_p187g111at 107.793 kb on + strand, within HP15_p187g111at 107.826 kb on - strand, within HP15_p187g111at 107.873 kb on - strand, within HP15_p187g111at 107.908 kb on + strand, within HP15_p187g111at 107.975 kb on - strandat 107.979 kb on - strandat 108.001 kb on - strandat 108.034 kb on - strandat 108.044 kb on + strandat 108.093 kb on + strandat 108.110 kb on - strandat 108.156 kb on - strandat 108.209 kb on - strandat 108.220 kb on - strandat 108.234 kb on + strandat 108.295 kb on - strandat 108.295 kb on - strandat 108.303 kb on + strand, within HP15_p187g112at 108.313 kb on + strand, within HP15_p187g112at 108.314 kb on + strand, within HP15_p187g112at 108.321 kb on - strand, within HP15_p187g112at 108.338 kb on - strand, within HP15_p187g112at 108.502 kb on + strand, within HP15_p187g112at 108.502 kb on + strand, within HP15_p187g112at 108.519 kb on + strand, within HP15_p187g112at 108.520 kb on - strand, within HP15_p187g112at 108.527 kb on - strand, within HP15_p187g112at 108.527 kb on - strand, within HP15_p187g112at 108.594 kb on + strand, within HP15_p187g112at 108.602 kb on - strand, within HP15_p187g112at 108.608 kb on + strand, within HP15_p187g112at 108.608 kb on + strand, within HP15_p187g112at 108.616 kb on - strand, within HP15_p187g112at 108.662 kb on - strand, within HP15_p187g112at 108.665 kb on + strand, within HP15_p187g112at 108.668 kb on - strand, within HP15_p187g112at 108.673 kb on - strand, within HP15_p187g112at 108.695 kb on + strand, within HP15_p187g112at 108.708 kb on + strand, within HP15_p187g112at 108.717 kb on + strand, within HP15_p187g112at 108.728 kb on + strand, within HP15_p187g112at 108.754 kb on + strand, within HP15_p187g112at 108.810 kb on - strandat 108.810 kb on - strandat 108.812 kb on + strandat 108.812 kb on + strandat 108.812 kb on + strandat 108.820 kb on - strandat 108.887 kb on - strandat 108.952 kb on + strandat 108.977 kb on + strandat 109.006 kb on - strandat 109.020 kb on - strandat 109.034 kb on + strandat 109.037 kb on - strandat 109.037 kb on - strandat 109.056 kb on - strandat 109.061 kb on - strandat 109.090 kb on + strandat 109.098 kb on - strandat 109.119 kb on - strandat 109.123 kb on - strandat 109.154 kb on + strandat 109.154 kb on - strandat 109.154 kb on - strandat 109.182 kb on - strandat 109.197 kb on - strandat 109.197 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline as (N)
remove
104,735 + HP15_p187g110 0.54 +2.3
104,773 - HP15_p187g110 0.56 +1.7
104,773 - HP15_p187g110 0.56 -0.2
104,796 + HP15_p187g110 0.57 +0.8
104,854 - HP15_p187g110 0.61 +0.9
104,854 - HP15_p187g110 0.61 +0.2
104,864 - HP15_p187g110 0.61 +1.2
104,890 + HP15_p187g110 0.63 -1.5
104,890 + HP15_p187g110 0.63 +1.1
104,914 - HP15_p187g110 0.64 -0.8
105,003 - HP15_p187g110 0.69 +2.3
105,011 - HP15_p187g110 0.70 +0.7
105,077 - HP15_p187g110 0.73 -0.3
105,077 - HP15_p187g110 0.73 -1.9
105,080 + HP15_p187g110 0.74 +1.7
105,216 + HP15_p187g110 0.81 +2.0
105,216 + HP15_p187g110 0.81 -0.7
105,225 - HP15_p187g110 0.82 -0.6
105,225 - HP15_p187g110 0.82 +0.1
105,282 - HP15_p187g110 0.85 -0.1
105,335 + HP15_p187g110 0.88 -1.6
105,335 + HP15_p187g110 0.88 +0.9
105,335 + HP15_p187g110 0.88 +0.5
105,335 + HP15_p187g110 0.88 -0.9
105,335 + HP15_p187g110 0.88 -0.2
105,335 + HP15_p187g110 0.88 +1.4
105,335 + HP15_p187g110 0.88 +1.2
105,335 + HP15_p187g110 0.88 -0.6
105,335 + HP15_p187g110 0.88 -0.0
105,335 + HP15_p187g110 0.88 +1.3
105,335 + HP15_p187g110 0.88 +1.9
105,335 + HP15_p187g110 0.88 -0.7
105,335 + HP15_p187g110 0.88 +1.8
105,335 + HP15_p187g110 0.88 +0.5
105,343 + HP15_p187g110 0.89 -0.5
105,343 - HP15_p187g110 0.89 -0.8
105,343 - HP15_p187g110 0.89 +1.1
105,343 - HP15_p187g110 0.89 -0.9
105,343 - HP15_p187g110 0.89 -0.3
105,343 - HP15_p187g110 0.89 +0.6
105,343 - HP15_p187g110 0.89 -0.2
105,343 - HP15_p187g110 0.89 +1.6
105,343 - HP15_p187g110 0.89 +1.6
105,343 - HP15_p187g110 0.89 -1.3
105,343 - HP15_p187g110 0.89 -0.1
105,343 - HP15_p187g110 0.89 +0.9
105,343 - HP15_p187g110 0.89 +1.8
105,351 - HP15_p187g110 0.89 +1.8
105,456 + -0.7
105,475 + +1.0
105,527 - -1.1
105,535 + -0.3
105,543 - -0.6
105,543 - +1.3
105,547 + -0.6
105,556 + +1.5
105,556 + -0.2
105,556 + -0.6
105,578 + -0.9
105,580 + -0.7
105,586 - +3.2
105,588 - +0.2
105,591 - +0.5
105,633 + -0.6
105,645 - +0.4
105,681 - +0.3
105,731 + +1.2
105,731 + +1.5
105,777 + +1.7
105,832 + -0.1
105,853 + -0.6
105,863 + +1.5
105,871 - +1.6
105,871 - -0.6
105,871 - +0.3
105,874 + -2.3
105,875 + -0.1
105,882 + +1.4
105,883 - -0.3
105,884 + +0.9
105,884 + -1.2
105,884 + +1.7
105,884 + +1.3
105,884 + +2.0
105,892 - -1.0
105,892 - -0.5
105,892 - -0.2
105,892 - +0.7
105,892 - +0.5
105,892 - +1.5
105,980 + HP15_p187g111 0.11 -0.7
105,983 - HP15_p187g111 0.11 -0.5
105,983 - HP15_p187g111 0.11 -0.5
105,988 - HP15_p187g111 0.11 +1.4
105,993 - HP15_p187g111 0.11 +1.3
106,003 + HP15_p187g111 0.12 -0.6
106,004 + HP15_p187g111 0.12 -0.5
106,005 + HP15_p187g111 0.12 -1.7
106,011 + HP15_p187g111 0.12 -1.1
106,012 - HP15_p187g111 0.12 -1.5
106,019 - HP15_p187g111 0.12 +1.4
106,019 - HP15_p187g111 0.12 -0.6
106,019 - HP15_p187g111 0.12 +0.6
106,019 - HP15_p187g111 0.12 +1.4
106,072 + HP15_p187g111 0.15 +0.7
106,117 + HP15_p187g111 0.16 -1.2
106,159 - HP15_p187g111 0.18 +0.3
106,172 - HP15_p187g111 0.19 -1.2
106,181 + HP15_p187g111 0.19 +0.6
106,183 + HP15_p187g111 0.19 +0.1
106,212 + HP15_p187g111 0.20 +0.3
106,221 - HP15_p187g111 0.20 -0.8
106,268 - HP15_p187g111 0.22 -1.4
106,286 + HP15_p187g111 0.23 -0.7
106,286 + HP15_p187g111 0.23 +0.4
106,286 + HP15_p187g111 0.23 -0.5
106,292 + HP15_p187g111 0.23 +0.4
106,292 + HP15_p187g111 0.23 -0.9
106,294 - HP15_p187g111 0.23 +0.3
106,294 - HP15_p187g111 0.23 +0.4
106,294 - HP15_p187g111 0.23 -1.2
106,294 - HP15_p187g111 0.23 +1.6
106,300 - HP15_p187g111 0.24 -1.7
106,300 - HP15_p187g111 0.24 +1.3
106,349 - HP15_p187g111 0.26 +1.1
106,376 + HP15_p187g111 0.27 -1.3
106,429 - HP15_p187g111 0.29 -0.6
106,443 + HP15_p187g111 0.29 +0.5
106,591 + HP15_p187g111 0.35 -0.1
106,646 + HP15_p187g111 0.37 -0.6
106,725 + HP15_p187g111 0.40 -0.6
106,797 + HP15_p187g111 0.43 +0.0
106,817 - HP15_p187g111 0.44 -1.0
106,819 - HP15_p187g111 0.44 -1.2
106,882 - HP15_p187g111 0.47 -0.5
106,882 - HP15_p187g111 0.47 -0.4
106,900 + HP15_p187g111 0.47 -0.1
106,908 + HP15_p187g111 0.48 +0.2
106,920 - HP15_p187g111 0.48 -1.1
106,936 + HP15_p187g111 0.49 -1.2
107,005 + HP15_p187g111 0.52 +1.7
107,013 + HP15_p187g111 0.52 -0.7
107,015 - HP15_p187g111 0.52 -0.6
107,026 + HP15_p187g111 0.52 +0.5
107,036 - HP15_p187g111 0.53 -2.3
107,058 + HP15_p187g111 0.54 -1.0
107,079 - HP15_p187g111 0.54 +1.1
107,085 + HP15_p187g111 0.55 +0.4
107,085 + HP15_p187g111 0.55 +1.4
107,092 + HP15_p187g111 0.55 -1.2
107,139 - HP15_p187g111 0.57 +0.1
107,184 - HP15_p187g111 0.59 -0.3
107,200 + HP15_p187g111 0.59 -1.4
107,305 + HP15_p187g111 0.63 -1.1
107,305 + HP15_p187g111 0.63 +1.0
107,323 - HP15_p187g111 0.64 -0.3
107,371 - HP15_p187g111 0.66 -1.1
107,410 + HP15_p187g111 0.68 +1.7
107,535 + HP15_p187g111 0.73 +1.2
107,543 - HP15_p187g111 0.73 +0.9
107,575 - HP15_p187g111 0.74 +0.8
107,668 - HP15_p187g111 0.78 +1.3
107,668 - HP15_p187g111 0.78 -0.3
107,690 + HP15_p187g111 0.79 +0.0
107,690 - HP15_p187g111 0.79 +2.6
107,765 - HP15_p187g111 0.82 +0.0
107,765 - HP15_p187g111 0.82 -1.1
107,765 - HP15_p187g111 0.82 -1.4
107,765 - HP15_p187g111 0.82 +0.8
107,765 - HP15_p187g111 0.82 -1.2
107,765 - HP15_p187g111 0.82 +1.6
107,790 + HP15_p187g111 0.83 -0.5
107,793 + HP15_p187g111 0.83 +1.3
107,826 - HP15_p187g111 0.84 -2.0
107,873 - HP15_p187g111 0.86 -2.0
107,908 + HP15_p187g111 0.87 +0.1
107,975 - +0.1
107,979 - -1.6
108,001 - -0.3
108,034 - +1.3
108,044 + -1.1
108,093 + +1.6
108,110 - +1.7
108,156 - +1.6
108,209 - -1.7
108,220 - -0.3
108,234 + +1.2
108,295 - -0.4
108,295 - +1.4
108,303 + HP15_p187g112 0.11 -0.6
108,313 + HP15_p187g112 0.12 -0.9
108,314 + HP15_p187g112 0.13 +0.4
108,321 - HP15_p187g112 0.14 -0.1
108,338 - HP15_p187g112 0.17 -1.3
108,502 + HP15_p187g112 0.45 +1.4
108,502 + HP15_p187g112 0.45 +2.2
108,519 + HP15_p187g112 0.48 -0.4
108,520 - HP15_p187g112 0.49 +1.7
108,527 - HP15_p187g112 0.50 -3.9
108,527 - HP15_p187g112 0.50 +0.5
108,594 + HP15_p187g112 0.61 -0.0
108,602 - HP15_p187g112 0.63 +0.2
108,608 + HP15_p187g112 0.64 -0.7
108,608 + HP15_p187g112 0.64 -0.7
108,616 - HP15_p187g112 0.65 +0.5
108,662 - HP15_p187g112 0.73 +0.9
108,665 + HP15_p187g112 0.74 +1.0
108,668 - HP15_p187g112 0.74 -0.5
108,673 - HP15_p187g112 0.75 +1.6
108,695 + HP15_p187g112 0.79 +3.2
108,708 + HP15_p187g112 0.81 +0.1
108,717 + HP15_p187g112 0.83 -0.7
108,728 + HP15_p187g112 0.85 +1.0
108,754 + HP15_p187g112 0.89 +1.9
108,810 - -0.6
108,810 - -0.9
108,812 + +1.1
108,812 + -1.3
108,812 + -0.9
108,820 - +1.4
108,887 - -1.0
108,952 + +1.2
108,977 + +1.4
109,006 - -2.0
109,020 - +0.1
109,034 + -2.4
109,037 - +0.9
109,037 - -1.0
109,056 - -0.5
109,061 - +1.6
109,090 + -0.0
109,098 - +1.9
109,119 - -0.6
109,123 - +0.2
109,154 + -0.2
109,154 - +1.5
109,154 - -1.0
109,182 - -0.1
109,197 - -0.6
109,197 - +0.0

Or see this region's nucleotide sequence