Strain Fitness in Marinobacter adhaerens HP15 around HP15_4061

Experiment: L-Citrulline as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4060 and HP15_4061 are separated by 92 nucleotidesHP15_4061 and HP15_4062 are separated by 141 nucleotides HP15_4060: HP15_4060 - methyl-accepting chemotaxis sensory transducer, at 4,293,719 to 4,295,359 _4060 HP15_4061: HP15_4061 - TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component, at 4,295,452 to 4,296,537 _4061 HP15_4062: HP15_4062 - spermidine/putrescine ABC transporter, ATP-binding protein, at 4,296,679 to 4,297,800 _4062 Position (kb) 4295 4296 4297Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4294.461 kb on - strand, within HP15_4060at 4294.612 kb on - strand, within HP15_4060at 4294.675 kb on - strand, within HP15_4060at 4294.760 kb on + strand, within HP15_4060at 4294.783 kb on - strand, within HP15_4060at 4294.822 kb on - strand, within HP15_4060at 4294.822 kb on - strand, within HP15_4060at 4294.875 kb on + strand, within HP15_4060at 4294.920 kb on - strand, within HP15_4060at 4294.948 kb on - strand, within HP15_4060at 4294.978 kb on - strand, within HP15_4060at 4295.203 kb on - strandat 4295.235 kb on - strandat 4295.282 kb on - strandat 4295.287 kb on - strandat 4295.317 kb on + strandat 4295.365 kb on + strandat 4295.502 kb on - strandat 4295.523 kb on - strandat 4295.551 kb on + strandat 4295.719 kb on + strand, within HP15_4061at 4295.812 kb on - strand, within HP15_4061at 4295.842 kb on + strand, within HP15_4061at 4295.871 kb on + strand, within HP15_4061at 4295.877 kb on + strand, within HP15_4061at 4295.877 kb on + strand, within HP15_4061at 4295.954 kb on - strand, within HP15_4061at 4295.962 kb on - strand, within HP15_4061at 4295.962 kb on - strand, within HP15_4061at 4295.972 kb on - strand, within HP15_4061at 4295.972 kb on - strand, within HP15_4061at 4295.987 kb on + strand, within HP15_4061at 4296.019 kb on - strand, within HP15_4061at 4296.054 kb on + strand, within HP15_4061at 4296.054 kb on + strand, within HP15_4061at 4296.054 kb on + strand, within HP15_4061at 4296.054 kb on + strand, within HP15_4061at 4296.062 kb on - strand, within HP15_4061at 4296.072 kb on - strand, within HP15_4061at 4296.158 kb on - strand, within HP15_4061at 4296.201 kb on + strand, within HP15_4061at 4296.217 kb on - strand, within HP15_4061at 4296.258 kb on - strand, within HP15_4061at 4296.335 kb on + strand, within HP15_4061at 4296.382 kb on - strand, within HP15_4061at 4296.384 kb on + strand, within HP15_4061at 4296.568 kb on - strandat 4296.569 kb on + strandat 4296.603 kb on + strandat 4296.668 kb on + strandat 4296.786 kb on + strandat 4296.804 kb on + strand, within HP15_4062at 4296.817 kb on - strand, within HP15_4062at 4296.818 kb on - strand, within HP15_4062at 4296.822 kb on - strand, within HP15_4062at 4296.855 kb on + strand, within HP15_4062at 4296.868 kb on - strand, within HP15_4062at 4296.868 kb on - strand, within HP15_4062at 4296.868 kb on - strand, within HP15_4062at 4296.933 kb on - strand, within HP15_4062at 4296.958 kb on + strand, within HP15_4062at 4297.033 kb on + strand, within HP15_4062at 4297.041 kb on - strand, within HP15_4062at 4297.068 kb on + strand, within HP15_4062at 4297.076 kb on - strand, within HP15_4062at 4297.153 kb on - strand, within HP15_4062at 4297.248 kb on - strand, within HP15_4062at 4297.345 kb on + strand, within HP15_4062at 4297.353 kb on - strand, within HP15_4062at 4297.380 kb on + strand, within HP15_4062at 4297.380 kb on + strand, within HP15_4062at 4297.412 kb on + strand, within HP15_4062

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline as (N)
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4,294,461 - HP15_4060 0.45 +0.1
4,294,612 - HP15_4060 0.54 -0.6
4,294,675 - HP15_4060 0.58 +0.0
4,294,760 + HP15_4060 0.63 +1.1
4,294,783 - HP15_4060 0.65 -0.6
4,294,822 - HP15_4060 0.67 -1.3
4,294,822 - HP15_4060 0.67 +0.7
4,294,875 + HP15_4060 0.70 +2.6
4,294,920 - HP15_4060 0.73 -0.3
4,294,948 - HP15_4060 0.75 -0.7
4,294,978 - HP15_4060 0.77 -0.3
4,295,203 - +1.6
4,295,235 - +0.8
4,295,282 - +0.8
4,295,287 - -0.5
4,295,317 + -0.7
4,295,365 + +1.1
4,295,502 - -0.1
4,295,523 - -0.8
4,295,551 + +1.7
4,295,719 + HP15_4061 0.25 +1.5
4,295,812 - HP15_4061 0.33 -1.9
4,295,842 + HP15_4061 0.36 +1.3
4,295,871 + HP15_4061 0.39 -1.0
4,295,877 + HP15_4061 0.39 -1.1
4,295,877 + HP15_4061 0.39 -0.6
4,295,954 - HP15_4061 0.46 +0.1
4,295,962 - HP15_4061 0.47 -2.3
4,295,962 - HP15_4061 0.47 -0.6
4,295,972 - HP15_4061 0.48 +0.5
4,295,972 - HP15_4061 0.48 +1.2
4,295,987 + HP15_4061 0.49 +1.8
4,296,019 - HP15_4061 0.52 +0.1
4,296,054 + HP15_4061 0.55 +0.7
4,296,054 + HP15_4061 0.55 +0.9
4,296,054 + HP15_4061 0.55 -0.7
4,296,054 + HP15_4061 0.55 -0.7
4,296,062 - HP15_4061 0.56 +0.4
4,296,072 - HP15_4061 0.57 +1.5
4,296,158 - HP15_4061 0.65 +0.4
4,296,201 + HP15_4061 0.69 -1.2
4,296,217 - HP15_4061 0.70 +1.1
4,296,258 - HP15_4061 0.74 +0.8
4,296,335 + HP15_4061 0.81 +0.7
4,296,382 - HP15_4061 0.86 +0.3
4,296,384 + HP15_4061 0.86 -1.2
4,296,568 - +0.5
4,296,569 + +1.3
4,296,603 + +1.0
4,296,668 + -0.9
4,296,786 + +0.7
4,296,804 + HP15_4062 0.11 +1.5
4,296,817 - HP15_4062 0.12 -0.4
4,296,818 - HP15_4062 0.12 +1.5
4,296,822 - HP15_4062 0.13 -0.3
4,296,855 + HP15_4062 0.16 -0.1
4,296,868 - HP15_4062 0.17 -1.5
4,296,868 - HP15_4062 0.17 +2.8
4,296,868 - HP15_4062 0.17 +0.4
4,296,933 - HP15_4062 0.23 +1.9
4,296,958 + HP15_4062 0.25 -0.4
4,297,033 + HP15_4062 0.32 -0.9
4,297,041 - HP15_4062 0.32 -0.4
4,297,068 + HP15_4062 0.35 +1.9
4,297,076 - HP15_4062 0.35 -0.7
4,297,153 - HP15_4062 0.42 -2.2
4,297,248 - HP15_4062 0.51 +0.1
4,297,345 + HP15_4062 0.59 +0.5
4,297,353 - HP15_4062 0.60 -1.2
4,297,380 + HP15_4062 0.62 +0.1
4,297,380 + HP15_4062 0.62 -1.9
4,297,412 + HP15_4062 0.65 -0.5

Or see this region's nucleotide sequence