Strain Fitness in Marinobacter adhaerens HP15 around HP15_4042

Experiment: L-Citrulline as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4041 and HP15_4042 overlap by 4 nucleotidesHP15_4042 and HP15_4043 are separated by 95 nucleotidesHP15_4043 and HP15_4044 are separated by 69 nucleotides HP15_4041: HP15_4041 - OmpA/MotB domain protein, at 4,276,231 to 4,277,256 _4041 HP15_4042: HP15_4042 - MotA/TolQ/ExbB proton channel family protein, at 4,277,253 to 4,277,981 _4042 HP15_4043: HP15_4043 - 4-hydroxybenzoyl-CoA thioesterase, at 4,278,077 to 4,278,523 _4043 HP15_4044: HP15_4044 - ThiJ/PfpI family protein, at 4,278,593 to 4,279,294 _4044 Position (kb) 4277 4278Strain fitness (log2 ratio) -2 -1 0 1 2at 4276.309 kb on - strandat 4276.397 kb on - strand, within HP15_4041at 4276.483 kb on - strand, within HP15_4041at 4276.499 kb on + strand, within HP15_4041at 4276.555 kb on - strand, within HP15_4041at 4276.592 kb on - strand, within HP15_4041at 4276.670 kb on + strand, within HP15_4041at 4276.678 kb on - strand, within HP15_4041at 4276.732 kb on - strand, within HP15_4041at 4276.893 kb on + strand, within HP15_4041at 4276.963 kb on + strand, within HP15_4041at 4276.972 kb on - strand, within HP15_4041at 4277.129 kb on + strand, within HP15_4041at 4277.251 kb on + strandat 4277.259 kb on - strandat 4277.292 kb on + strandat 4277.302 kb on + strandat 4277.313 kb on + strandat 4277.315 kb on + strandat 4277.315 kb on + strandat 4277.315 kb on + strandat 4277.323 kb on - strandat 4277.345 kb on - strand, within HP15_4042at 4277.350 kb on - strand, within HP15_4042at 4277.364 kb on + strand, within HP15_4042at 4277.410 kb on - strand, within HP15_4042at 4277.429 kb on - strand, within HP15_4042at 4277.442 kb on + strand, within HP15_4042at 4277.491 kb on - strand, within HP15_4042at 4277.554 kb on + strand, within HP15_4042at 4277.653 kb on - strand, within HP15_4042at 4277.667 kb on - strand, within HP15_4042at 4277.772 kb on - strand, within HP15_4042at 4277.815 kb on + strand, within HP15_4042at 4277.892 kb on + strand, within HP15_4042at 4277.966 kb on + strandat 4278.084 kb on + strandat 4278.137 kb on - strand, within HP15_4043at 4278.311 kb on - strand, within HP15_4043at 4278.345 kb on + strand, within HP15_4043at 4278.348 kb on - strand, within HP15_4043at 4278.412 kb on - strand, within HP15_4043at 4278.591 kb on + strandat 4278.607 kb on - strandat 4278.607 kb on - strandat 4278.628 kb on - strandat 4278.634 kb on + strandat 4278.701 kb on - strand, within HP15_4044at 4278.701 kb on - strand, within HP15_4044at 4278.757 kb on + strand, within HP15_4044at 4278.767 kb on + strand, within HP15_4044at 4278.811 kb on - strand, within HP15_4044at 4278.865 kb on + strand, within HP15_4044at 4278.873 kb on - strand, within HP15_4044at 4278.873 kb on - strand, within HP15_4044at 4278.915 kb on + strand, within HP15_4044at 4278.923 kb on - strand, within HP15_4044at 4278.923 kb on - strand, within HP15_4044

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline as (N)
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4,276,309 - -0.4
4,276,397 - HP15_4041 0.16 +1.3
4,276,483 - HP15_4041 0.25 -1.4
4,276,499 + HP15_4041 0.26 +0.9
4,276,555 - HP15_4041 0.32 -0.6
4,276,592 - HP15_4041 0.35 +1.3
4,276,670 + HP15_4041 0.43 +1.8
4,276,678 - HP15_4041 0.44 +1.5
4,276,732 - HP15_4041 0.49 +1.3
4,276,893 + HP15_4041 0.65 +0.8
4,276,963 + HP15_4041 0.71 -0.6
4,276,972 - HP15_4041 0.72 +1.3
4,277,129 + HP15_4041 0.88 +0.2
4,277,251 + -0.5
4,277,259 - -1.1
4,277,292 + +1.0
4,277,302 + +1.4
4,277,313 + -0.7
4,277,315 + -0.3
4,277,315 + +1.5
4,277,315 + +1.7
4,277,323 - -0.6
4,277,345 - HP15_4042 0.13 +1.2
4,277,350 - HP15_4042 0.13 -0.2
4,277,364 + HP15_4042 0.15 +2.1
4,277,410 - HP15_4042 0.22 +1.4
4,277,429 - HP15_4042 0.24 +0.6
4,277,442 + HP15_4042 0.26 -1.9
4,277,491 - HP15_4042 0.33 +0.1
4,277,554 + HP15_4042 0.41 +1.4
4,277,653 - HP15_4042 0.55 -0.3
4,277,667 - HP15_4042 0.57 +0.2
4,277,772 - HP15_4042 0.71 +0.9
4,277,815 + HP15_4042 0.77 +2.0
4,277,892 + HP15_4042 0.88 +0.3
4,277,966 + +1.9
4,278,084 + +0.7
4,278,137 - HP15_4043 0.13 +1.4
4,278,311 - HP15_4043 0.52 -0.1
4,278,345 + HP15_4043 0.60 +0.1
4,278,348 - HP15_4043 0.61 -0.8
4,278,412 - HP15_4043 0.75 -0.3
4,278,591 + +1.9
4,278,607 - -0.1
4,278,607 - +0.1
4,278,628 - +0.2
4,278,634 + -1.4
4,278,701 - HP15_4044 0.15 +2.0
4,278,701 - HP15_4044 0.15 +1.2
4,278,757 + HP15_4044 0.23 -0.7
4,278,767 + HP15_4044 0.25 +1.9
4,278,811 - HP15_4044 0.31 +1.9
4,278,865 + HP15_4044 0.39 -1.1
4,278,873 - HP15_4044 0.40 -0.1
4,278,873 - HP15_4044 0.40 -0.3
4,278,915 + HP15_4044 0.46 +1.2
4,278,923 - HP15_4044 0.47 +1.1
4,278,923 - HP15_4044 0.47 -0.1

Or see this region's nucleotide sequence