Experiment: L-Citrulline as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3605 and HP15_3606 are separated by 235 nucleotides HP15_3606 and HP15_3607 are separated by 184 nucleotides
HP15_3605: HP15_3605 - conserved hypothetical protein, at 3,800,136 to 3,801,955
_3605
HP15_3606: HP15_3606 - abortive infection protein-like protein, at 3,802,191 to 3,802,613
_3606
HP15_3607: HP15_3607 - DEAD/DEAH box helicase domain protein, at 3,802,798 to 3,804,120
_3607
Position (kb)
3802
3803 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3801.206 kb on + strand, within HP15_3605 at 3801.243 kb on - strand, within HP15_3605 at 3801.319 kb on + strand, within HP15_3605 at 3801.326 kb on - strand, within HP15_3605 at 3801.412 kb on - strand, within HP15_3605 at 3801.450 kb on - strand, within HP15_3605 at 3801.541 kb on + strand, within HP15_3605 at 3801.541 kb on + strand, within HP15_3605 at 3801.549 kb on - strand, within HP15_3605 at 3801.549 kb on - strand, within HP15_3605 at 3801.608 kb on - strand, within HP15_3605 at 3801.661 kb on - strand, within HP15_3605 at 3801.780 kb on + strand at 3801.798 kb on - strand at 3801.858 kb on + strand at 3801.909 kb on + strand at 3801.966 kb on - strand at 3801.971 kb on - strand at 3802.085 kb on - strand at 3802.214 kb on - strand at 3802.257 kb on + strand, within HP15_3606 at 3802.257 kb on + strand, within HP15_3606 at 3802.257 kb on + strand, within HP15_3606 at 3802.257 kb on + strand, within HP15_3606 at 3802.257 kb on + strand, within HP15_3606 at 3802.257 kb on + strand, within HP15_3606 at 3802.262 kb on + strand, within HP15_3606 at 3802.265 kb on - strand, within HP15_3606 at 3802.265 kb on - strand, within HP15_3606 at 3802.392 kb on + strand, within HP15_3606 at 3802.418 kb on - strand, within HP15_3606 at 3802.435 kb on + strand, within HP15_3606 at 3802.443 kb on - strand, within HP15_3606 at 3802.490 kb on + strand, within HP15_3606 at 3802.609 kb on + strand at 3802.617 kb on - strand at 3802.629 kb on + strand at 3802.629 kb on + strand at 3802.637 kb on - strand at 3802.802 kb on - strand at 3802.805 kb on + strand at 3802.833 kb on + strand at 3802.961 kb on + strand, within HP15_3607 at 3802.961 kb on + strand, within HP15_3607 at 3802.964 kb on - strand, within HP15_3607 at 3802.969 kb on - strand, within HP15_3607 at 3802.969 kb on - strand, within HP15_3607 at 3802.969 kb on - strand, within HP15_3607 at 3802.998 kb on + strand, within HP15_3607 at 3802.998 kb on + strand, within HP15_3607 at 3803.006 kb on - strand, within HP15_3607 at 3803.078 kb on + strand, within HP15_3607 at 3803.164 kb on - strand, within HP15_3607 at 3803.164 kb on - strand, within HP15_3607 at 3803.166 kb on + strand, within HP15_3607 at 3803.174 kb on - strand, within HP15_3607 at 3803.242 kb on + strand, within HP15_3607 at 3803.250 kb on - strand, within HP15_3607 at 3803.285 kb on + strand, within HP15_3607 at 3803.293 kb on - strand, within HP15_3607 at 3803.313 kb on - strand, within HP15_3607 at 3803.399 kb on - strand, within HP15_3607 at 3803.432 kb on + strand, within HP15_3607 at 3803.511 kb on + strand, within HP15_3607 at 3803.531 kb on + strand, within HP15_3607
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline as (N) remove 3,801,206 + HP15_3605 0.59 -0.5 3,801,243 - HP15_3605 0.61 -0.6 3,801,319 + HP15_3605 0.65 -0.2 3,801,326 - HP15_3605 0.65 -0.3 3,801,412 - HP15_3605 0.70 -1.4 3,801,450 - HP15_3605 0.72 -0.5 3,801,541 + HP15_3605 0.77 +1.5 3,801,541 + HP15_3605 0.77 -0.7 3,801,549 - HP15_3605 0.78 +2.7 3,801,549 - HP15_3605 0.78 +0.4 3,801,608 - HP15_3605 0.81 +0.8 3,801,661 - HP15_3605 0.84 -1.0 3,801,780 + +0.1 3,801,798 - +1.6 3,801,858 + -0.4 3,801,909 + +0.3 3,801,966 - +0.3 3,801,971 - -0.0 3,802,085 - -0.0 3,802,214 - -1.0 3,802,257 + HP15_3606 0.16 -1.1 3,802,257 + HP15_3606 0.16 +1.4 3,802,257 + HP15_3606 0.16 +1.2 3,802,257 + HP15_3606 0.16 +1.2 3,802,257 + HP15_3606 0.16 +0.0 3,802,257 + HP15_3606 0.16 +1.8 3,802,262 + HP15_3606 0.17 +0.4 3,802,265 - HP15_3606 0.17 +1.5 3,802,265 - HP15_3606 0.17 +1.1 3,802,392 + HP15_3606 0.48 -0.8 3,802,418 - HP15_3606 0.54 +2.7 3,802,435 + HP15_3606 0.58 -0.6 3,802,443 - HP15_3606 0.60 +1.3 3,802,490 + HP15_3606 0.71 +0.2 3,802,609 + -1.0 3,802,617 - +0.7 3,802,629 + +0.3 3,802,629 + -0.4 3,802,637 - +2.2 3,802,802 - -0.8 3,802,805 + +1.5 3,802,833 + +0.3 3,802,961 + HP15_3607 0.12 +0.8 3,802,961 + HP15_3607 0.12 +1.3 3,802,964 - HP15_3607 0.13 +0.8 3,802,969 - HP15_3607 0.13 -0.4 3,802,969 - HP15_3607 0.13 -0.8 3,802,969 - HP15_3607 0.13 +1.0 3,802,998 + HP15_3607 0.15 -0.1 3,802,998 + HP15_3607 0.15 +1.0 3,803,006 - HP15_3607 0.16 -0.3 3,803,078 + HP15_3607 0.21 +1.8 3,803,164 - HP15_3607 0.28 -0.3 3,803,164 - HP15_3607 0.28 -0.9 3,803,166 + HP15_3607 0.28 -1.4 3,803,174 - HP15_3607 0.28 -0.5 3,803,242 + HP15_3607 0.34 +0.7 3,803,250 - HP15_3607 0.34 -1.1 3,803,285 + HP15_3607 0.37 +0.3 3,803,293 - HP15_3607 0.37 +0.7 3,803,313 - HP15_3607 0.39 -0.4 3,803,399 - HP15_3607 0.45 +2.6 3,803,432 + HP15_3607 0.48 -0.4 3,803,511 + HP15_3607 0.54 -0.1 3,803,531 + HP15_3607 0.55 -2.6
Or see this region's nucleotide sequence