Experiment: L-Citrulline as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3500 and HP15_3501 are separated by 22 nucleotides HP15_3501 and HP15_3502 are separated by 26 nucleotides HP15_3502 and HP15_3503 are separated by 3 nucleotides
HP15_3500: HP15_3500 - conserved hypothetical protein, membrane, at 3,684,001 to 3,685,035
_3500
HP15_3501: HP15_3501 - integral membrane protein, possible transporter, at 3,685,058 to 3,687,121
_3501
HP15_3502: HP15_3502 - conserved hypothetical protein, at 3,687,148 to 3,688,092
_3502
HP15_3503: HP15_3503 - hypothetical protein, at 3,688,096 to 3,688,455
_3503
Position (kb)
3685
3686
3687
3688 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3684.084 kb on + strand at 3684.086 kb on + strand at 3684.125 kb on + strand, within HP15_3500 at 3684.200 kb on + strand, within HP15_3500 at 3684.208 kb on - strand, within HP15_3500 at 3684.208 kb on - strand, within HP15_3500 at 3684.215 kb on + strand, within HP15_3500 at 3684.229 kb on + strand, within HP15_3500 at 3684.232 kb on - strand, within HP15_3500 at 3684.234 kb on + strand, within HP15_3500 at 3684.237 kb on - strand, within HP15_3500 at 3684.237 kb on - strand, within HP15_3500 at 3684.242 kb on - strand, within HP15_3500 at 3684.386 kb on + strand, within HP15_3500 at 3684.416 kb on - strand, within HP15_3500 at 3684.436 kb on - strand, within HP15_3500 at 3684.448 kb on + strand, within HP15_3500 at 3684.453 kb on + strand, within HP15_3500 at 3684.461 kb on - strand, within HP15_3500 at 3684.703 kb on + strand, within HP15_3500 at 3684.705 kb on - strand, within HP15_3500 at 3684.716 kb on + strand, within HP15_3500 at 3684.860 kb on + strand, within HP15_3500 at 3684.885 kb on - strand, within HP15_3500 at 3685.029 kb on + strand at 3685.037 kb on - strand at 3685.228 kb on - strand at 3685.496 kb on + strand, within HP15_3501 at 3685.507 kb on - strand, within HP15_3501 at 3685.680 kb on + strand, within HP15_3501 at 3685.727 kb on + strand, within HP15_3501 at 3685.749 kb on + strand, within HP15_3501 at 3685.786 kb on - strand, within HP15_3501 at 3685.899 kb on - strand, within HP15_3501 at 3685.999 kb on - strand, within HP15_3501 at 3686.028 kb on + strand, within HP15_3501 at 3686.028 kb on + strand, within HP15_3501 at 3686.028 kb on + strand, within HP15_3501 at 3686.028 kb on + strand, within HP15_3501 at 3686.030 kb on + strand, within HP15_3501 at 3686.030 kb on + strand, within HP15_3501 at 3686.036 kb on - strand, within HP15_3501 at 3686.070 kb on + strand, within HP15_3501 at 3686.145 kb on + strand, within HP15_3501 at 3686.146 kb on + strand, within HP15_3501 at 3686.179 kb on - strand, within HP15_3501 at 3686.291 kb on - strand, within HP15_3501 at 3686.291 kb on - strand, within HP15_3501 at 3686.301 kb on - strand, within HP15_3501 at 3686.328 kb on + strand, within HP15_3501 at 3686.336 kb on - strand, within HP15_3501 at 3686.374 kb on + strand, within HP15_3501 at 3686.382 kb on - strand, within HP15_3501 at 3686.382 kb on - strand, within HP15_3501 at 3686.382 kb on - strand, within HP15_3501 at 3686.419 kb on + strand, within HP15_3501 at 3686.546 kb on - strand, within HP15_3501 at 3686.549 kb on + strand, within HP15_3501 at 3686.549 kb on + strand, within HP15_3501 at 3686.557 kb on - strand, within HP15_3501 at 3686.557 kb on - strand, within HP15_3501 at 3686.559 kb on + strand, within HP15_3501 at 3686.567 kb on - strand, within HP15_3501 at 3686.678 kb on + strand, within HP15_3501 at 3686.691 kb on - strand, within HP15_3501 at 3686.691 kb on - strand, within HP15_3501 at 3686.869 kb on + strand, within HP15_3501 at 3686.979 kb on + strand at 3686.979 kb on + strand at 3686.987 kb on - strand at 3686.987 kb on - strand at 3687.036 kb on + strand at 3687.065 kb on + strand at 3687.108 kb on - strand at 3687.160 kb on + strand at 3687.165 kb on + strand at 3687.182 kb on + strand at 3687.383 kb on + strand, within HP15_3502 at 3687.391 kb on - strand, within HP15_3502 at 3687.396 kb on - strand, within HP15_3502 at 3687.398 kb on + strand, within HP15_3502 at 3687.445 kb on - strand, within HP15_3502 at 3687.485 kb on + strand, within HP15_3502 at 3687.491 kb on + strand, within HP15_3502 at 3687.579 kb on - strand, within HP15_3502 at 3687.580 kb on - strand, within HP15_3502 at 3687.628 kb on - strand, within HP15_3502 at 3687.731 kb on + strand, within HP15_3502 at 3687.744 kb on - strand, within HP15_3502 at 3687.771 kb on - strand, within HP15_3502 at 3687.871 kb on + strand, within HP15_3502 at 3688.011 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline as (N) remove 3,684,084 + -0.1 3,684,086 + +1.0 3,684,125 + HP15_3500 0.12 +2.2 3,684,200 + HP15_3500 0.19 +1.6 3,684,208 - HP15_3500 0.20 -0.1 3,684,208 - HP15_3500 0.20 -0.9 3,684,215 + HP15_3500 0.21 +0.3 3,684,229 + HP15_3500 0.22 -0.8 3,684,232 - HP15_3500 0.22 -0.9 3,684,234 + HP15_3500 0.23 +1.4 3,684,237 - HP15_3500 0.23 +0.8 3,684,237 - HP15_3500 0.23 -0.4 3,684,242 - HP15_3500 0.23 +1.7 3,684,386 + HP15_3500 0.37 +1.3 3,684,416 - HP15_3500 0.40 +1.1 3,684,436 - HP15_3500 0.42 -0.4 3,684,448 + HP15_3500 0.43 -0.6 3,684,453 + HP15_3500 0.44 -1.4 3,684,461 - HP15_3500 0.44 -0.0 3,684,703 + HP15_3500 0.68 -0.7 3,684,705 - HP15_3500 0.68 +1.5 3,684,716 + HP15_3500 0.69 -1.9 3,684,860 + HP15_3500 0.83 +1.5 3,684,885 - HP15_3500 0.85 +1.7 3,685,029 + -1.0 3,685,037 - +0.0 3,685,228 - -0.2 3,685,496 + HP15_3501 0.21 +0.9 3,685,507 - HP15_3501 0.22 -0.3 3,685,680 + HP15_3501 0.30 +2.1 3,685,727 + HP15_3501 0.32 +0.1 3,685,749 + HP15_3501 0.33 +0.8 3,685,786 - HP15_3501 0.35 -2.0 3,685,899 - HP15_3501 0.41 -0.5 3,685,999 - HP15_3501 0.46 -0.1 3,686,028 + HP15_3501 0.47 -0.6 3,686,028 + HP15_3501 0.47 +0.0 3,686,028 + HP15_3501 0.47 +1.5 3,686,028 + HP15_3501 0.47 +0.0 3,686,030 + HP15_3501 0.47 -0.7 3,686,030 + HP15_3501 0.47 +0.4 3,686,036 - HP15_3501 0.47 +0.0 3,686,070 + HP15_3501 0.49 -0.1 3,686,145 + HP15_3501 0.53 -0.5 3,686,146 + HP15_3501 0.53 -0.2 3,686,179 - HP15_3501 0.54 -1.6 3,686,291 - HP15_3501 0.60 +1.8 3,686,291 - HP15_3501 0.60 -0.7 3,686,301 - HP15_3501 0.60 -0.5 3,686,328 + HP15_3501 0.62 -0.5 3,686,336 - HP15_3501 0.62 +1.7 3,686,374 + HP15_3501 0.64 -1.5 3,686,382 - HP15_3501 0.64 -0.6 3,686,382 - HP15_3501 0.64 +0.2 3,686,382 - HP15_3501 0.64 -0.3 3,686,419 + HP15_3501 0.66 -0.8 3,686,546 - HP15_3501 0.72 -1.9 3,686,549 + HP15_3501 0.72 -0.3 3,686,549 + HP15_3501 0.72 -0.2 3,686,557 - HP15_3501 0.73 +1.3 3,686,557 - HP15_3501 0.73 -0.6 3,686,559 + HP15_3501 0.73 +1.0 3,686,567 - HP15_3501 0.73 +1.4 3,686,678 + HP15_3501 0.78 -1.3 3,686,691 - HP15_3501 0.79 +1.4 3,686,691 - HP15_3501 0.79 +2.0 3,686,869 + HP15_3501 0.88 -0.9 3,686,979 + -0.8 3,686,979 + -1.0 3,686,987 - -1.5 3,686,987 - +1.8 3,687,036 + +0.5 3,687,065 + -0.6 3,687,108 - +1.7 3,687,160 + -0.5 3,687,165 + -1.2 3,687,182 + -0.2 3,687,383 + HP15_3502 0.25 -0.1 3,687,391 - HP15_3502 0.26 +1.6 3,687,396 - HP15_3502 0.26 +0.2 3,687,398 + HP15_3502 0.26 -0.3 3,687,445 - HP15_3502 0.31 +1.8 3,687,485 + HP15_3502 0.36 -0.5 3,687,491 + HP15_3502 0.36 +0.9 3,687,579 - HP15_3502 0.46 -0.6 3,687,580 - HP15_3502 0.46 -0.8 3,687,628 - HP15_3502 0.51 +0.2 3,687,731 + HP15_3502 0.62 -1.1 3,687,744 - HP15_3502 0.63 -0.2 3,687,771 - HP15_3502 0.66 +0.8 3,687,871 + HP15_3502 0.77 +0.7 3,688,011 - +0.7
Or see this region's nucleotide sequence