Strain Fitness in Marinobacter adhaerens HP15 around HP15_3312

Experiment: L-Citrulline as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3310 and HP15_3311 are separated by 5 nucleotidesHP15_3311 and HP15_3312 are separated by 18 nucleotidesHP15_3312 and HP15_3313 are separated by 171 nucleotides HP15_3310: HP15_3310 - pirin family protein, at 3,466,982 to 3,467,830 _3310 HP15_3311: HP15_3311 - phosphoribulokinase, at 3,467,836 to 3,468,702 _3311 HP15_3312: HP15_3312 - diguanylate cyclase/phosphodiesterase, at 3,468,721 to 3,472,482 _3312 HP15_3313: HP15_3313 - zinc protease protein, at 3,472,654 to 3,473,724 _3313 Position (kb) 3468 3469 3470 3471 3472 3473Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3467.780 kb on + strandat 3467.988 kb on + strand, within HP15_3311at 3467.991 kb on - strand, within HP15_3311at 3468.068 kb on - strand, within HP15_3311at 3468.251 kb on + strand, within HP15_3311at 3468.305 kb on - strand, within HP15_3311at 3468.386 kb on + strand, within HP15_3311at 3468.521 kb on + strand, within HP15_3311at 3468.552 kb on - strand, within HP15_3311at 3468.589 kb on - strand, within HP15_3311at 3468.596 kb on - strand, within HP15_3311at 3468.603 kb on + strand, within HP15_3311at 3468.733 kb on + strandat 3468.771 kb on - strandat 3468.797 kb on - strandat 3468.807 kb on - strandat 3468.822 kb on - strandat 3468.885 kb on - strandat 3468.893 kb on + strandat 3468.932 kb on + strandat 3468.950 kb on - strandat 3469.075 kb on + strandat 3469.080 kb on + strandat 3469.235 kb on - strand, within HP15_3312at 3469.358 kb on + strand, within HP15_3312at 3469.366 kb on - strand, within HP15_3312at 3469.504 kb on + strand, within HP15_3312at 3469.565 kb on - strand, within HP15_3312at 3469.565 kb on - strand, within HP15_3312at 3469.578 kb on + strand, within HP15_3312at 3469.586 kb on - strand, within HP15_3312at 3469.591 kb on - strand, within HP15_3312at 3469.596 kb on - strand, within HP15_3312at 3469.630 kb on + strand, within HP15_3312at 3469.753 kb on + strand, within HP15_3312at 3469.760 kb on + strand, within HP15_3312at 3470.161 kb on + strand, within HP15_3312at 3470.165 kb on + strand, within HP15_3312at 3470.165 kb on + strand, within HP15_3312at 3470.255 kb on - strand, within HP15_3312at 3470.255 kb on - strand, within HP15_3312at 3470.267 kb on - strand, within HP15_3312at 3470.476 kb on + strand, within HP15_3312at 3470.484 kb on + strand, within HP15_3312at 3470.494 kb on + strand, within HP15_3312at 3470.502 kb on - strand, within HP15_3312at 3470.615 kb on + strand, within HP15_3312at 3470.690 kb on - strand, within HP15_3312at 3470.899 kb on + strand, within HP15_3312at 3470.918 kb on + strand, within HP15_3312at 3471.008 kb on - strand, within HP15_3312at 3471.015 kb on + strand, within HP15_3312at 3471.215 kb on + strand, within HP15_3312at 3471.229 kb on - strand, within HP15_3312at 3471.229 kb on - strand, within HP15_3312at 3471.312 kb on - strand, within HP15_3312at 3471.374 kb on + strand, within HP15_3312at 3471.374 kb on + strand, within HP15_3312at 3471.382 kb on - strand, within HP15_3312at 3471.481 kb on - strand, within HP15_3312at 3471.583 kb on - strand, within HP15_3312at 3471.594 kb on - strand, within HP15_3312at 3471.873 kb on - strand, within HP15_3312at 3472.039 kb on - strand, within HP15_3312at 3472.070 kb on + strand, within HP15_3312at 3472.184 kb on + strandat 3472.301 kb on - strandat 3472.511 kb on - strandat 3472.513 kb on - strandat 3472.802 kb on + strand, within HP15_3313at 3472.802 kb on + strand, within HP15_3313at 3472.802 kb on + strand, within HP15_3313at 3472.928 kb on + strand, within HP15_3313at 3472.931 kb on - strand, within HP15_3313at 3472.933 kb on + strand, within HP15_3313at 3472.941 kb on + strand, within HP15_3313at 3473.089 kb on - strand, within HP15_3313at 3473.105 kb on + strand, within HP15_3313at 3473.139 kb on - strand, within HP15_3313at 3473.151 kb on - strand, within HP15_3313at 3473.208 kb on + strand, within HP15_3313at 3473.209 kb on - strand, within HP15_3313at 3473.218 kb on + strand, within HP15_3313at 3473.242 kb on + strand, within HP15_3313at 3473.295 kb on + strand, within HP15_3313at 3473.308 kb on - strand, within HP15_3313at 3473.320 kb on + strand, within HP15_3313at 3473.320 kb on + strand, within HP15_3313at 3473.482 kb on - strand, within HP15_3313

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline as (N)
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3,467,780 + -0.6
3,467,988 + HP15_3311 0.18 +1.3
3,467,991 - HP15_3311 0.18 -0.6
3,468,068 - HP15_3311 0.27 +1.9
3,468,251 + HP15_3311 0.48 +0.1
3,468,305 - HP15_3311 0.54 +3.5
3,468,386 + HP15_3311 0.63 -0.7
3,468,521 + HP15_3311 0.79 -1.6
3,468,552 - HP15_3311 0.83 -1.1
3,468,589 - HP15_3311 0.87 +1.8
3,468,596 - HP15_3311 0.88 -0.0
3,468,603 + HP15_3311 0.88 +1.8
3,468,733 + +0.9
3,468,771 - +0.0
3,468,797 - -0.4
3,468,807 - -0.5
3,468,822 - +1.7
3,468,885 - -0.3
3,468,893 + -1.6
3,468,932 + +0.9
3,468,950 - -1.4
3,469,075 + -1.1
3,469,080 + -0.2
3,469,235 - HP15_3312 0.14 -1.0
3,469,358 + HP15_3312 0.17 -0.2
3,469,366 - HP15_3312 0.17 -1.1
3,469,504 + HP15_3312 0.21 +1.1
3,469,565 - HP15_3312 0.22 -0.7
3,469,565 - HP15_3312 0.22 +0.2
3,469,578 + HP15_3312 0.23 -0.7
3,469,586 - HP15_3312 0.23 -0.8
3,469,591 - HP15_3312 0.23 -0.1
3,469,596 - HP15_3312 0.23 +0.8
3,469,630 + HP15_3312 0.24 -0.3
3,469,753 + HP15_3312 0.27 -0.8
3,469,760 + HP15_3312 0.28 -1.4
3,470,161 + HP15_3312 0.38 -0.8
3,470,165 + HP15_3312 0.38 -0.9
3,470,165 + HP15_3312 0.38 -2.6
3,470,255 - HP15_3312 0.41 +0.3
3,470,255 - HP15_3312 0.41 -0.9
3,470,267 - HP15_3312 0.41 +0.6
3,470,476 + HP15_3312 0.47 -1.4
3,470,484 + HP15_3312 0.47 +1.4
3,470,494 + HP15_3312 0.47 -0.9
3,470,502 - HP15_3312 0.47 -1.8
3,470,615 + HP15_3312 0.50 -1.0
3,470,690 - HP15_3312 0.52 -0.7
3,470,899 + HP15_3312 0.58 -0.1
3,470,918 + HP15_3312 0.58 +0.8
3,471,008 - HP15_3312 0.61 +0.1
3,471,015 + HP15_3312 0.61 +1.6
3,471,215 + HP15_3312 0.66 -0.9
3,471,229 - HP15_3312 0.67 +1.5
3,471,229 - HP15_3312 0.67 -2.7
3,471,312 - HP15_3312 0.69 -0.3
3,471,374 + HP15_3312 0.71 -0.5
3,471,374 + HP15_3312 0.71 +1.0
3,471,382 - HP15_3312 0.71 +0.2
3,471,481 - HP15_3312 0.73 -0.9
3,471,583 - HP15_3312 0.76 -1.1
3,471,594 - HP15_3312 0.76 -0.2
3,471,873 - HP15_3312 0.84 +1.2
3,472,039 - HP15_3312 0.88 -0.5
3,472,070 + HP15_3312 0.89 +2.9
3,472,184 + -0.0
3,472,301 - +0.3
3,472,511 - -2.2
3,472,513 - -0.3
3,472,802 + HP15_3313 0.14 -0.7
3,472,802 + HP15_3313 0.14 -0.1
3,472,802 + HP15_3313 0.14 -0.9
3,472,928 + HP15_3313 0.26 -0.5
3,472,931 - HP15_3313 0.26 -0.3
3,472,933 + HP15_3313 0.26 +2.3
3,472,941 + HP15_3313 0.27 +1.0
3,473,089 - HP15_3313 0.41 +1.6
3,473,105 + HP15_3313 0.42 -0.9
3,473,139 - HP15_3313 0.45 +0.8
3,473,151 - HP15_3313 0.46 +1.0
3,473,208 + HP15_3313 0.52 -0.7
3,473,209 - HP15_3313 0.52 -1.3
3,473,218 + HP15_3313 0.53 +2.1
3,473,242 + HP15_3313 0.55 +0.7
3,473,295 + HP15_3313 0.60 -0.3
3,473,308 - HP15_3313 0.61 +1.6
3,473,320 + HP15_3313 0.62 +1.1
3,473,320 + HP15_3313 0.62 +1.0
3,473,482 - HP15_3313 0.77 -0.5

Or see this region's nucleotide sequence