Strain Fitness in Marinobacter adhaerens HP15 around HP15_3019

Experiment: L-Citrulline as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3017 and HP15_3018 are separated by 102 nucleotidesHP15_3018 and HP15_3019 are separated by 249 nucleotidesHP15_3019 and HP15_3020 are separated by 3 nucleotidesHP15_3020 and HP15_3021 are separated by 12 nucleotides HP15_3017: HP15_3017 - molybdenum-pterin-binding protein, at 3,162,500 to 3,162,928 _3017 HP15_3018: HP15_3018 - protein containing UspA domain, at 3,163,031 to 3,163,402 _3018 HP15_3019: HP15_3019 - Na+/Ca+ antiporter, CaCA family, at 3,163,652 to 3,164,623 _3019 HP15_3020: HP15_3020 - lysine exporter protein (LYSE/YGGA), at 3,164,627 to 3,165,247 _3020 HP15_3021: HP15_3021 - glycolate oxidase iron-sulfur subunit, at 3,165,260 to 3,165,691 _3021 Position (kb) 3163 3164 3165Strain fitness (log2 ratio) -2 -1 0 1 2at 3162.673 kb on + strand, within HP15_3017at 3162.673 kb on + strand, within HP15_3017at 3162.673 kb on + strand, within HP15_3017at 3162.673 kb on + strand, within HP15_3017at 3162.681 kb on - strand, within HP15_3017at 3162.759 kb on - strand, within HP15_3017at 3162.903 kb on + strandat 3163.055 kb on - strandat 3163.423 kb on + strandat 3163.506 kb on + strandat 3163.587 kb on - strandat 3163.713 kb on - strandat 3163.805 kb on - strand, within HP15_3019at 3163.835 kb on - strand, within HP15_3019at 3163.865 kb on + strand, within HP15_3019at 3163.878 kb on - strand, within HP15_3019at 3163.951 kb on + strand, within HP15_3019at 3163.998 kb on - strand, within HP15_3019at 3164.010 kb on + strand, within HP15_3019at 3164.227 kb on + strand, within HP15_3019at 3164.246 kb on - strand, within HP15_3019at 3164.312 kb on + strand, within HP15_3019at 3164.393 kb on - strand, within HP15_3019at 3164.403 kb on - strand, within HP15_3019at 3164.403 kb on - strand, within HP15_3019at 3164.459 kb on + strand, within HP15_3019at 3164.474 kb on - strand, within HP15_3019at 3164.578 kb on - strandat 3164.688 kb on - strandat 3164.696 kb on - strand, within HP15_3020at 3165.000 kb on - strand, within HP15_3020at 3165.000 kb on - strand, within HP15_3020at 3165.059 kb on - strand, within HP15_3020at 3165.064 kb on + strand, within HP15_3020at 3165.251 kb on - strandat 3165.294 kb on - strandat 3165.398 kb on + strand, within HP15_3021at 3165.414 kb on + strand, within HP15_3021at 3165.422 kb on - strand, within HP15_3021at 3165.422 kb on - strand, within HP15_3021at 3165.438 kb on + strand, within HP15_3021

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline as (N)
remove
3,162,673 + HP15_3017 0.40 -0.5
3,162,673 + HP15_3017 0.40 -0.6
3,162,673 + HP15_3017 0.40 +0.5
3,162,673 + HP15_3017 0.40 -1.0
3,162,681 - HP15_3017 0.42 -0.0
3,162,759 - HP15_3017 0.60 -1.1
3,162,903 + +1.5
3,163,055 - +0.0
3,163,423 + +0.1
3,163,506 + +0.5
3,163,587 - -0.8
3,163,713 - -0.4
3,163,805 - HP15_3019 0.16 +1.9
3,163,835 - HP15_3019 0.19 -0.2
3,163,865 + HP15_3019 0.22 -0.6
3,163,878 - HP15_3019 0.23 +1.2
3,163,951 + HP15_3019 0.31 -0.5
3,163,998 - HP15_3019 0.36 +1.3
3,164,010 + HP15_3019 0.37 +0.3
3,164,227 + HP15_3019 0.59 +1.6
3,164,246 - HP15_3019 0.61 -0.7
3,164,312 + HP15_3019 0.68 +0.2
3,164,393 - HP15_3019 0.76 -1.1
3,164,403 - HP15_3019 0.77 +0.4
3,164,403 - HP15_3019 0.77 +1.5
3,164,459 + HP15_3019 0.83 +1.7
3,164,474 - HP15_3019 0.85 -2.2
3,164,578 - -0.5
3,164,688 - -1.5
3,164,696 - HP15_3020 0.11 +0.3
3,165,000 - HP15_3020 0.60 +0.0
3,165,000 - HP15_3020 0.60 -0.6
3,165,059 - HP15_3020 0.70 +1.4
3,165,064 + HP15_3020 0.70 +0.7
3,165,251 - -1.8
3,165,294 - -0.3
3,165,398 + HP15_3021 0.32 +0.1
3,165,414 + HP15_3021 0.36 +0.1
3,165,422 - HP15_3021 0.38 -0.8
3,165,422 - HP15_3021 0.38 +1.7
3,165,438 + HP15_3021 0.41 +1.6

Or see this region's nucleotide sequence