Experiment: L-Citrulline as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2845 and HP15_2846 are separated by 224 nucleotides HP15_2846 and HP15_2847 are separated by 36 nucleotides HP15_2847 and HP15_2848 are separated by 27 nucleotides HP15_2848 and HP15_2849 are separated by 260 nucleotides HP15_2849 and HP15_2850 are separated by 27 nucleotides
HP15_2845: HP15_2845 - conserved hypothetical protein, at 2,986,419 to 2,987,099
_2845
HP15_2846: HP15_2846 - conserved hypothetical protein, at 2,987,324 to 2,987,851
_2846
HP15_2847: HP15_2847 - secreted protein containing PEGA domain, at 2,987,888 to 2,988,502
_2847
HP15_2848: HP15_2848 - secreted protein, at 2,988,530 to 2,988,823
_2848
HP15_2849: HP15_2849 - SEC-C motif domain protein, at 2,989,084 to 2,989,428
_2849
HP15_2850: HP15_2850 - conserved hypothetical protein, at 2,989,456 to 2,989,890
_2850
Position (kb)
2987
2988
2989 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2986.924 kb on - strand, within HP15_2845 at 2986.976 kb on + strand, within HP15_2845 at 2987.044 kb on + strand at 2987.166 kb on + strand at 2987.191 kb on + strand at 2987.199 kb on - strand at 2987.241 kb on - strand at 2987.300 kb on - strand at 2987.314 kb on + strand at 2987.334 kb on - strand at 2987.336 kb on + strand at 2987.338 kb on + strand at 2987.344 kb on - strand at 2987.346 kb on - strand at 2987.412 kb on + strand, within HP15_2846 at 2987.417 kb on + strand, within HP15_2846 at 2987.584 kb on + strand, within HP15_2846 at 2987.647 kb on - strand, within HP15_2846 at 2987.678 kb on - strand, within HP15_2846 at 2987.782 kb on + strand, within HP15_2846 at 2987.796 kb on - strand, within HP15_2846 at 2987.913 kb on - strand at 2988.227 kb on + strand, within HP15_2847 at 2988.232 kb on + strand, within HP15_2847 at 2988.354 kb on + strand, within HP15_2847 at 2988.354 kb on + strand, within HP15_2847 at 2988.361 kb on + strand, within HP15_2847 at 2988.431 kb on - strand, within HP15_2847 at 2988.433 kb on + strand, within HP15_2847 at 2988.456 kb on + strand at 2988.456 kb on + strand at 2988.484 kb on + strand at 2988.484 kb on + strand at 2988.484 kb on + strand at 2988.492 kb on + strand at 2988.492 kb on - strand at 2988.492 kb on - strand at 2988.494 kb on + strand at 2988.500 kb on - strand at 2988.502 kb on - strand at 2988.502 kb on - strand at 2988.548 kb on - strand at 2988.613 kb on + strand, within HP15_2848 at 2988.674 kb on + strand, within HP15_2848 at 2988.686 kb on + strand, within HP15_2848 at 2988.704 kb on + strand, within HP15_2848 at 2988.761 kb on + strand, within HP15_2848 at 2988.761 kb on + strand, within HP15_2848 at 2988.781 kb on + strand, within HP15_2848 at 2988.791 kb on - strand, within HP15_2848 at 2988.852 kb on + strand at 2988.860 kb on - strand at 2988.869 kb on + strand at 2988.877 kb on - strand at 2988.999 kb on - strand at 2989.029 kb on + strand at 2989.116 kb on + strand at 2989.131 kb on - strand, within HP15_2849 at 2989.139 kb on - strand, within HP15_2849 at 2989.160 kb on + strand, within HP15_2849 at 2989.211 kb on + strand, within HP15_2849 at 2989.253 kb on + strand, within HP15_2849 at 2989.253 kb on + strand, within HP15_2849 at 2989.253 kb on + strand, within HP15_2849 at 2989.261 kb on - strand, within HP15_2849 at 2989.261 kb on - strand, within HP15_2849 at 2989.282 kb on - strand, within HP15_2849 at 2989.322 kb on + strand, within HP15_2849 at 2989.322 kb on + strand, within HP15_2849 at 2989.330 kb on - strand, within HP15_2849 at 2989.330 kb on - strand, within HP15_2849 at 2989.330 kb on - strand, within HP15_2849 at 2989.335 kb on - strand, within HP15_2849 at 2989.469 kb on + strand at 2989.469 kb on + strand at 2989.497 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline as (N) remove 2,986,924 - HP15_2845 0.74 +1.8 2,986,976 + HP15_2845 0.82 +0.4 2,987,044 + +0.2 2,987,166 + +1.5 2,987,191 + -0.7 2,987,199 - +0.4 2,987,241 - -1.0 2,987,300 - -0.6 2,987,314 + +1.8 2,987,334 - +1.1 2,987,336 + -0.7 2,987,338 + +0.3 2,987,344 - +2.4 2,987,346 - -0.4 2,987,412 + HP15_2846 0.17 -2.0 2,987,417 + HP15_2846 0.18 -0.7 2,987,584 + HP15_2846 0.49 -0.3 2,987,647 - HP15_2846 0.61 -0.7 2,987,678 - HP15_2846 0.67 +1.3 2,987,782 + HP15_2846 0.87 +0.7 2,987,796 - HP15_2846 0.89 -1.2 2,987,913 - -0.8 2,988,227 + HP15_2847 0.55 +1.2 2,988,232 + HP15_2847 0.56 +1.6 2,988,354 + HP15_2847 0.76 +1.4 2,988,354 + HP15_2847 0.76 +1.5 2,988,361 + HP15_2847 0.77 +1.3 2,988,431 - HP15_2847 0.88 +1.4 2,988,433 + HP15_2847 0.89 +1.8 2,988,456 + +1.0 2,988,456 + -0.0 2,988,484 + -0.6 2,988,484 + +0.8 2,988,484 + -1.4 2,988,492 + +0.8 2,988,492 - -0.2 2,988,492 - -1.0 2,988,494 + +2.1 2,988,500 - +0.1 2,988,502 - +1.3 2,988,502 - -0.3 2,988,548 - +2.3 2,988,613 + HP15_2848 0.28 +0.0 2,988,674 + HP15_2848 0.49 -0.3 2,988,686 + HP15_2848 0.53 -0.0 2,988,704 + HP15_2848 0.59 -0.2 2,988,761 + HP15_2848 0.79 -0.7 2,988,761 + HP15_2848 0.79 +0.3 2,988,781 + HP15_2848 0.85 +1.4 2,988,791 - HP15_2848 0.89 +0.8 2,988,852 + +1.2 2,988,860 - -1.3 2,988,869 + -0.0 2,988,877 - +2.4 2,988,999 - +0.1 2,989,029 + +2.5 2,989,116 + -0.2 2,989,131 - HP15_2849 0.14 -0.9 2,989,139 - HP15_2849 0.16 +1.5 2,989,160 + HP15_2849 0.22 -1.9 2,989,211 + HP15_2849 0.37 -0.5 2,989,253 + HP15_2849 0.49 +1.5 2,989,253 + HP15_2849 0.49 -0.7 2,989,253 + HP15_2849 0.49 +1.6 2,989,261 - HP15_2849 0.51 -0.7 2,989,261 - HP15_2849 0.51 +0.2 2,989,282 - HP15_2849 0.57 +0.8 2,989,322 + HP15_2849 0.69 +1.0 2,989,322 + HP15_2849 0.69 -0.3 2,989,330 - HP15_2849 0.71 +0.3 2,989,330 - HP15_2849 0.71 +0.1 2,989,330 - HP15_2849 0.71 +2.2 2,989,335 - HP15_2849 0.73 +1.4 2,989,469 + +1.4 2,989,469 + -0.7 2,989,497 + -0.9
Or see this region's nucleotide sequence