Strain Fitness in Marinobacter adhaerens HP15 around HP15_2847

Experiment: L-Citrulline as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2845 and HP15_2846 are separated by 224 nucleotidesHP15_2846 and HP15_2847 are separated by 36 nucleotidesHP15_2847 and HP15_2848 are separated by 27 nucleotidesHP15_2848 and HP15_2849 are separated by 260 nucleotidesHP15_2849 and HP15_2850 are separated by 27 nucleotides HP15_2845: HP15_2845 - conserved hypothetical protein, at 2,986,419 to 2,987,099 _2845 HP15_2846: HP15_2846 - conserved hypothetical protein, at 2,987,324 to 2,987,851 _2846 HP15_2847: HP15_2847 - secreted protein containing PEGA domain, at 2,987,888 to 2,988,502 _2847 HP15_2848: HP15_2848 - secreted protein, at 2,988,530 to 2,988,823 _2848 HP15_2849: HP15_2849 - SEC-C motif domain protein, at 2,989,084 to 2,989,428 _2849 HP15_2850: HP15_2850 - conserved hypothetical protein, at 2,989,456 to 2,989,890 _2850 Position (kb) 2987 2988 2989Strain fitness (log2 ratio) -2 -1 0 1 2at 2986.924 kb on - strand, within HP15_2845at 2986.976 kb on + strand, within HP15_2845at 2987.044 kb on + strandat 2987.166 kb on + strandat 2987.191 kb on + strandat 2987.199 kb on - strandat 2987.241 kb on - strandat 2987.300 kb on - strandat 2987.314 kb on + strandat 2987.334 kb on - strandat 2987.336 kb on + strandat 2987.338 kb on + strandat 2987.344 kb on - strandat 2987.346 kb on - strandat 2987.412 kb on + strand, within HP15_2846at 2987.417 kb on + strand, within HP15_2846at 2987.584 kb on + strand, within HP15_2846at 2987.647 kb on - strand, within HP15_2846at 2987.678 kb on - strand, within HP15_2846at 2987.782 kb on + strand, within HP15_2846at 2987.796 kb on - strand, within HP15_2846at 2987.913 kb on - strandat 2988.227 kb on + strand, within HP15_2847at 2988.232 kb on + strand, within HP15_2847at 2988.354 kb on + strand, within HP15_2847at 2988.354 kb on + strand, within HP15_2847at 2988.361 kb on + strand, within HP15_2847at 2988.431 kb on - strand, within HP15_2847at 2988.433 kb on + strand, within HP15_2847at 2988.456 kb on + strandat 2988.456 kb on + strandat 2988.484 kb on + strandat 2988.484 kb on + strandat 2988.484 kb on + strandat 2988.492 kb on + strandat 2988.492 kb on - strandat 2988.492 kb on - strandat 2988.494 kb on + strandat 2988.500 kb on - strandat 2988.502 kb on - strandat 2988.502 kb on - strandat 2988.548 kb on - strandat 2988.613 kb on + strand, within HP15_2848at 2988.674 kb on + strand, within HP15_2848at 2988.686 kb on + strand, within HP15_2848at 2988.704 kb on + strand, within HP15_2848at 2988.761 kb on + strand, within HP15_2848at 2988.761 kb on + strand, within HP15_2848at 2988.781 kb on + strand, within HP15_2848at 2988.791 kb on - strand, within HP15_2848at 2988.852 kb on + strandat 2988.860 kb on - strandat 2988.869 kb on + strandat 2988.877 kb on - strandat 2988.999 kb on - strandat 2989.029 kb on + strandat 2989.116 kb on + strandat 2989.131 kb on - strand, within HP15_2849at 2989.139 kb on - strand, within HP15_2849at 2989.160 kb on + strand, within HP15_2849at 2989.211 kb on + strand, within HP15_2849at 2989.253 kb on + strand, within HP15_2849at 2989.253 kb on + strand, within HP15_2849at 2989.253 kb on + strand, within HP15_2849at 2989.261 kb on - strand, within HP15_2849at 2989.261 kb on - strand, within HP15_2849at 2989.282 kb on - strand, within HP15_2849at 2989.322 kb on + strand, within HP15_2849at 2989.322 kb on + strand, within HP15_2849at 2989.330 kb on - strand, within HP15_2849at 2989.330 kb on - strand, within HP15_2849at 2989.330 kb on - strand, within HP15_2849at 2989.335 kb on - strand, within HP15_2849at 2989.469 kb on + strandat 2989.469 kb on + strandat 2989.497 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline as (N)
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2,986,924 - HP15_2845 0.74 +1.8
2,986,976 + HP15_2845 0.82 +0.4
2,987,044 + +0.2
2,987,166 + +1.5
2,987,191 + -0.7
2,987,199 - +0.4
2,987,241 - -1.0
2,987,300 - -0.6
2,987,314 + +1.8
2,987,334 - +1.1
2,987,336 + -0.7
2,987,338 + +0.3
2,987,344 - +2.4
2,987,346 - -0.4
2,987,412 + HP15_2846 0.17 -2.0
2,987,417 + HP15_2846 0.18 -0.7
2,987,584 + HP15_2846 0.49 -0.3
2,987,647 - HP15_2846 0.61 -0.7
2,987,678 - HP15_2846 0.67 +1.3
2,987,782 + HP15_2846 0.87 +0.7
2,987,796 - HP15_2846 0.89 -1.2
2,987,913 - -0.8
2,988,227 + HP15_2847 0.55 +1.2
2,988,232 + HP15_2847 0.56 +1.6
2,988,354 + HP15_2847 0.76 +1.4
2,988,354 + HP15_2847 0.76 +1.5
2,988,361 + HP15_2847 0.77 +1.3
2,988,431 - HP15_2847 0.88 +1.4
2,988,433 + HP15_2847 0.89 +1.8
2,988,456 + +1.0
2,988,456 + -0.0
2,988,484 + -0.6
2,988,484 + +0.8
2,988,484 + -1.4
2,988,492 + +0.8
2,988,492 - -0.2
2,988,492 - -1.0
2,988,494 + +2.1
2,988,500 - +0.1
2,988,502 - +1.3
2,988,502 - -0.3
2,988,548 - +2.3
2,988,613 + HP15_2848 0.28 +0.0
2,988,674 + HP15_2848 0.49 -0.3
2,988,686 + HP15_2848 0.53 -0.0
2,988,704 + HP15_2848 0.59 -0.2
2,988,761 + HP15_2848 0.79 -0.7
2,988,761 + HP15_2848 0.79 +0.3
2,988,781 + HP15_2848 0.85 +1.4
2,988,791 - HP15_2848 0.89 +0.8
2,988,852 + +1.2
2,988,860 - -1.3
2,988,869 + -0.0
2,988,877 - +2.4
2,988,999 - +0.1
2,989,029 + +2.5
2,989,116 + -0.2
2,989,131 - HP15_2849 0.14 -0.9
2,989,139 - HP15_2849 0.16 +1.5
2,989,160 + HP15_2849 0.22 -1.9
2,989,211 + HP15_2849 0.37 -0.5
2,989,253 + HP15_2849 0.49 +1.5
2,989,253 + HP15_2849 0.49 -0.7
2,989,253 + HP15_2849 0.49 +1.6
2,989,261 - HP15_2849 0.51 -0.7
2,989,261 - HP15_2849 0.51 +0.2
2,989,282 - HP15_2849 0.57 +0.8
2,989,322 + HP15_2849 0.69 +1.0
2,989,322 + HP15_2849 0.69 -0.3
2,989,330 - HP15_2849 0.71 +0.3
2,989,330 - HP15_2849 0.71 +0.1
2,989,330 - HP15_2849 0.71 +2.2
2,989,335 - HP15_2849 0.73 +1.4
2,989,469 + +1.4
2,989,469 + -0.7
2,989,497 + -0.9

Or see this region's nucleotide sequence