Strain Fitness in Marinobacter adhaerens HP15 around HP15_2544

Experiment: L-Citrulline as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2542 and HP15_2543 are separated by 5 nucleotidesHP15_2543 and HP15_2544 are separated by 9 nucleotidesHP15_2544 and HP15_2545 are separated by 210 nucleotides HP15_2542: HP15_2542 - methylcrotonoyl-coenzyme A carboxylase 1 (alpha), at 2,686,950 to 2,688,920 _2542 HP15_2543: HP15_2543 - short-chain dehydrogenase/reductase SDR, at 2,688,926 to 2,689,744 _2543 HP15_2544: HP15_2544 - acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 2,689,754 to 2,691,635 _2544 HP15_2545: HP15_2545 - oxidoreductase, zinc-binding dehydrogenase family protein, at 2,691,846 to 2,692,826 _2545 Position (kb) 2689 2690 2691 2692Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2688.799 kb on + strandat 2688.802 kb on - strandat 2688.905 kb on + strandat 2689.155 kb on + strand, within HP15_2543at 2689.196 kb on + strand, within HP15_2543at 2689.204 kb on - strand, within HP15_2543at 2689.240 kb on + strand, within HP15_2543at 2689.248 kb on - strand, within HP15_2543at 2689.289 kb on + strand, within HP15_2543at 2689.289 kb on + strand, within HP15_2543at 2689.315 kb on + strand, within HP15_2543at 2689.315 kb on + strand, within HP15_2543at 2689.318 kb on - strand, within HP15_2543at 2689.320 kb on + strand, within HP15_2543at 2689.323 kb on - strand, within HP15_2543at 2689.394 kb on - strand, within HP15_2543at 2689.527 kb on + strand, within HP15_2543at 2689.535 kb on - strand, within HP15_2543at 2689.552 kb on - strand, within HP15_2543at 2689.639 kb on - strand, within HP15_2543at 2689.811 kb on + strandat 2690.061 kb on + strand, within HP15_2544at 2690.167 kb on + strand, within HP15_2544at 2690.175 kb on - strand, within HP15_2544at 2690.175 kb on - strand, within HP15_2544at 2690.175 kb on - strand, within HP15_2544at 2690.213 kb on - strand, within HP15_2544at 2690.296 kb on + strand, within HP15_2544at 2690.323 kb on + strand, within HP15_2544at 2690.340 kb on + strand, within HP15_2544at 2690.359 kb on - strand, within HP15_2544at 2690.383 kb on + strand, within HP15_2544at 2690.383 kb on + strand, within HP15_2544at 2690.383 kb on + strand, within HP15_2544at 2690.414 kb on - strand, within HP15_2544at 2690.414 kb on - strand, within HP15_2544at 2690.421 kb on - strand, within HP15_2544at 2690.447 kb on + strand, within HP15_2544at 2690.479 kb on + strand, within HP15_2544at 2690.487 kb on - strand, within HP15_2544at 2690.534 kb on + strand, within HP15_2544at 2690.594 kb on - strand, within HP15_2544at 2690.606 kb on + strand, within HP15_2544at 2690.611 kb on + strand, within HP15_2544at 2690.630 kb on - strand, within HP15_2544at 2690.654 kb on - strand, within HP15_2544at 2690.756 kb on + strand, within HP15_2544at 2690.819 kb on - strand, within HP15_2544at 2690.872 kb on + strand, within HP15_2544at 2691.025 kb on + strand, within HP15_2544at 2691.025 kb on + strand, within HP15_2544at 2691.148 kb on - strand, within HP15_2544at 2691.160 kb on - strand, within HP15_2544at 2691.192 kb on + strand, within HP15_2544at 2691.280 kb on + strand, within HP15_2544at 2691.288 kb on - strand, within HP15_2544at 2691.313 kb on - strand, within HP15_2544at 2691.331 kb on + strand, within HP15_2544at 2691.363 kb on - strand, within HP15_2544at 2691.436 kb on - strand, within HP15_2544at 2691.484 kb on + strandat 2691.554 kb on - strandat 2691.573 kb on + strandat 2691.573 kb on - strandat 2691.574 kb on + strandat 2691.574 kb on + strandat 2691.660 kb on + strandat 2691.660 kb on + strandat 2691.668 kb on - strandat 2691.775 kb on + strandat 2691.814 kb on - strandat 2691.819 kb on + strandat 2691.827 kb on - strandat 2691.845 kb on + strandat 2691.914 kb on - strandat 2691.935 kb on - strandat 2691.935 kb on - strandat 2691.937 kb on + strandat 2691.945 kb on - strand, within HP15_2545at 2691.945 kb on - strand, within HP15_2545at 2691.967 kb on + strand, within HP15_2545at 2691.975 kb on - strand, within HP15_2545at 2692.204 kb on + strand, within HP15_2545at 2692.229 kb on - strand, within HP15_2545at 2692.265 kb on + strand, within HP15_2545at 2692.344 kb on - strand, within HP15_2545at 2692.350 kb on - strand, within HP15_2545at 2692.419 kb on - strand, within HP15_2545at 2692.430 kb on + strand, within HP15_2545at 2692.430 kb on + strand, within HP15_2545at 2692.430 kb on + strand, within HP15_2545at 2692.430 kb on + strand, within HP15_2545at 2692.438 kb on - strand, within HP15_2545at 2692.438 kb on - strand, within HP15_2545at 2692.472 kb on - strand, within HP15_2545at 2692.558 kb on + strand, within HP15_2545

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline as (N)
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2,688,799 + -2.2
2,688,802 - +2.2
2,688,905 + -1.8
2,689,155 + HP15_2543 0.28 -0.5
2,689,196 + HP15_2543 0.33 +0.2
2,689,204 - HP15_2543 0.34 -0.3
2,689,240 + HP15_2543 0.38 -0.3
2,689,248 - HP15_2543 0.39 +1.3
2,689,289 + HP15_2543 0.44 -1.4
2,689,289 + HP15_2543 0.44 -1.1
2,689,315 + HP15_2543 0.47 -0.9
2,689,315 + HP15_2543 0.47 +0.1
2,689,318 - HP15_2543 0.48 +0.0
2,689,320 + HP15_2543 0.48 +0.4
2,689,323 - HP15_2543 0.48 -0.7
2,689,394 - HP15_2543 0.57 -0.9
2,689,527 + HP15_2543 0.73 +1.6
2,689,535 - HP15_2543 0.74 -0.0
2,689,552 - HP15_2543 0.76 +2.7
2,689,639 - HP15_2543 0.87 -2.3
2,689,811 + +0.1
2,690,061 + HP15_2544 0.16 -0.8
2,690,167 + HP15_2544 0.22 +1.5
2,690,175 - HP15_2544 0.22 +1.7
2,690,175 - HP15_2544 0.22 +1.0
2,690,175 - HP15_2544 0.22 +0.8
2,690,213 - HP15_2544 0.24 +2.1
2,690,296 + HP15_2544 0.29 -0.3
2,690,323 + HP15_2544 0.30 +1.5
2,690,340 + HP15_2544 0.31 -0.4
2,690,359 - HP15_2544 0.32 -0.0
2,690,383 + HP15_2544 0.33 -0.9
2,690,383 + HP15_2544 0.33 +1.3
2,690,383 + HP15_2544 0.33 +0.8
2,690,414 - HP15_2544 0.35 +0.0
2,690,414 - HP15_2544 0.35 -0.5
2,690,421 - HP15_2544 0.35 -0.3
2,690,447 + HP15_2544 0.37 -0.2
2,690,479 + HP15_2544 0.39 +0.7
2,690,487 - HP15_2544 0.39 +1.8
2,690,534 + HP15_2544 0.41 +0.0
2,690,594 - HP15_2544 0.45 +1.8
2,690,606 + HP15_2544 0.45 -0.6
2,690,611 + HP15_2544 0.46 +1.0
2,690,630 - HP15_2544 0.47 -0.5
2,690,654 - HP15_2544 0.48 -0.8
2,690,756 + HP15_2544 0.53 -0.6
2,690,819 - HP15_2544 0.57 -0.9
2,690,872 + HP15_2544 0.59 +2.2
2,691,025 + HP15_2544 0.68 +0.6
2,691,025 + HP15_2544 0.68 -0.6
2,691,148 - HP15_2544 0.74 +3.1
2,691,160 - HP15_2544 0.75 -0.6
2,691,192 + HP15_2544 0.76 +1.8
2,691,280 + HP15_2544 0.81 +1.5
2,691,288 - HP15_2544 0.82 +1.1
2,691,313 - HP15_2544 0.83 +0.1
2,691,331 + HP15_2544 0.84 +0.1
2,691,363 - HP15_2544 0.85 -2.0
2,691,436 - HP15_2544 0.89 +1.2
2,691,484 + +0.0
2,691,554 - +1.5
2,691,573 + +2.0
2,691,573 - +0.2
2,691,574 + -0.7
2,691,574 + -0.2
2,691,660 + +1.8
2,691,660 + -0.4
2,691,668 - -0.8
2,691,775 + -1.3
2,691,814 - +0.1
2,691,819 + -1.9
2,691,827 - -0.6
2,691,845 + -0.7
2,691,914 - +1.4
2,691,935 - -0.5
2,691,935 - +0.2
2,691,937 + -0.2
2,691,945 - HP15_2545 0.10 +1.6
2,691,945 - HP15_2545 0.10 +1.3
2,691,967 + HP15_2545 0.12 -0.7
2,691,975 - HP15_2545 0.13 +1.8
2,692,204 + HP15_2545 0.36 +2.0
2,692,229 - HP15_2545 0.39 -0.5
2,692,265 + HP15_2545 0.43 -0.9
2,692,344 - HP15_2545 0.51 +0.0
2,692,350 - HP15_2545 0.51 +1.1
2,692,419 - HP15_2545 0.58 -0.5
2,692,430 + HP15_2545 0.60 -0.6
2,692,430 + HP15_2545 0.60 +0.1
2,692,430 + HP15_2545 0.60 -0.7
2,692,430 + HP15_2545 0.60 +0.9
2,692,438 - HP15_2545 0.60 +1.4
2,692,438 - HP15_2545 0.60 -1.0
2,692,472 - HP15_2545 0.64 -0.4
2,692,558 + HP15_2545 0.73 +1.8

Or see this region's nucleotide sequence