Experiment: L-Citrulline as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2488 and HP15_2489 are separated by 113 nucleotides HP15_2489 and HP15_2490 are separated by 10 nucleotides HP15_2490 and HP15_2491 are separated by 34 nucleotides HP15_2491 and HP15_2492 overlap by 8 nucleotides
HP15_2488: HP15_2488 - FAD dependent oxidoreductase, at 2,628,430 to 2,629,539
_2488
HP15_2489: HP15_2489 - hypothetical protein, at 2,629,653 to 2,629,766
_2489
HP15_2490: HP15_2490 - kinase, at 2,629,777 to 2,630,793
_2490
HP15_2491: HP15_2491 - kinase, at 2,630,828 to 2,631,196
_2491
HP15_2492: HP15_2492 - methyltransferase, at 2,631,189 to 2,631,965
_2492
Position (kb)
2629
2630
2631 Strain fitness (log2 ratio)
-1
0
1
2 at 2628.799 kb on - strand, within HP15_2488 at 2628.804 kb on - strand, within HP15_2488 at 2628.804 kb on - strand, within HP15_2488 at 2628.835 kb on + strand, within HP15_2488 at 2629.046 kb on + strand, within HP15_2488 at 2629.110 kb on - strand, within HP15_2488 at 2629.278 kb on + strand, within HP15_2488 at 2629.278 kb on + strand, within HP15_2488 at 2629.284 kb on - strand, within HP15_2488 at 2629.329 kb on - strand, within HP15_2488 at 2629.359 kb on - strand, within HP15_2488 at 2629.399 kb on + strand, within HP15_2488 at 2629.419 kb on + strand, within HP15_2488 at 2629.419 kb on + strand, within HP15_2488 at 2629.427 kb on - strand, within HP15_2488 at 2629.462 kb on - strand at 2629.557 kb on - strand at 2629.576 kb on - strand at 2629.652 kb on - strand at 2629.899 kb on - strand, within HP15_2490 at 2629.928 kb on + strand, within HP15_2490 at 2630.033 kb on - strand, within HP15_2490 at 2630.075 kb on - strand, within HP15_2490 at 2630.086 kb on - strand, within HP15_2490 at 2630.149 kb on - strand, within HP15_2490 at 2630.153 kb on + strand, within HP15_2490 at 2630.180 kb on + strand, within HP15_2490 at 2630.180 kb on + strand, within HP15_2490 at 2630.312 kb on - strand, within HP15_2490 at 2630.314 kb on + strand, within HP15_2490 at 2630.314 kb on + strand, within HP15_2490 at 2630.314 kb on + strand, within HP15_2490 at 2630.322 kb on - strand, within HP15_2490 at 2630.322 kb on - strand, within HP15_2490 at 2630.322 kb on - strand, within HP15_2490 at 2630.351 kb on + strand, within HP15_2490 at 2630.709 kb on + strand at 2630.709 kb on + strand at 2630.745 kb on + strand at 2630.853 kb on - strand at 2631.026 kb on + strand, within HP15_2491 at 2631.079 kb on - strand, within HP15_2491 at 2631.225 kb on - strand at 2631.242 kb on + strand at 2631.348 kb on - strand, within HP15_2492 at 2631.397 kb on + strand, within HP15_2492 at 2631.402 kb on + strand, within HP15_2492 at 2631.402 kb on + strand, within HP15_2492 at 2631.410 kb on - strand, within HP15_2492 at 2631.410 kb on - strand, within HP15_2492 at 2631.410 kb on - strand, within HP15_2492 at 2631.410 kb on - strand, within HP15_2492 at 2631.595 kb on - strand, within HP15_2492 at 2631.654 kb on - strand, within HP15_2492 at 2631.691 kb on - strand, within HP15_2492 at 2631.691 kb on - strand, within HP15_2492 at 2631.701 kb on - strand, within HP15_2492
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline as (N) remove 2,628,799 - HP15_2488 0.33 -0.1 2,628,804 - HP15_2488 0.34 -0.7 2,628,804 - HP15_2488 0.34 +1.4 2,628,835 + HP15_2488 0.36 -0.1 2,629,046 + HP15_2488 0.55 -0.2 2,629,110 - HP15_2488 0.61 +0.7 2,629,278 + HP15_2488 0.76 +0.0 2,629,278 + HP15_2488 0.76 +0.1 2,629,284 - HP15_2488 0.77 -0.2 2,629,329 - HP15_2488 0.81 +1.0 2,629,359 - HP15_2488 0.84 -0.6 2,629,399 + HP15_2488 0.87 +0.5 2,629,419 + HP15_2488 0.89 +1.5 2,629,419 + HP15_2488 0.89 +1.4 2,629,427 - HP15_2488 0.90 -0.2 2,629,462 - -0.5 2,629,557 - +1.3 2,629,576 - +1.0 2,629,652 - +0.8 2,629,899 - HP15_2490 0.12 +1.3 2,629,928 + HP15_2490 0.15 -0.4 2,630,033 - HP15_2490 0.25 +2.2 2,630,075 - HP15_2490 0.29 -1.3 2,630,086 - HP15_2490 0.30 +2.4 2,630,149 - HP15_2490 0.37 +1.4 2,630,153 + HP15_2490 0.37 -0.5 2,630,180 + HP15_2490 0.40 +1.2 2,630,180 + HP15_2490 0.40 -1.1 2,630,312 - HP15_2490 0.53 +1.8 2,630,314 + HP15_2490 0.53 -0.1 2,630,314 + HP15_2490 0.53 -0.1 2,630,314 + HP15_2490 0.53 -1.1 2,630,322 - HP15_2490 0.54 +0.1 2,630,322 - HP15_2490 0.54 -0.1 2,630,322 - HP15_2490 0.54 +1.8 2,630,351 + HP15_2490 0.56 +0.6 2,630,709 + -1.6 2,630,709 + -0.5 2,630,745 + -0.6 2,630,853 - +1.6 2,631,026 + HP15_2491 0.54 +1.7 2,631,079 - HP15_2491 0.68 +0.1 2,631,225 - -0.1 2,631,242 + -0.1 2,631,348 - HP15_2492 0.20 +0.9 2,631,397 + HP15_2492 0.27 +1.9 2,631,402 + HP15_2492 0.27 -1.2 2,631,402 + HP15_2492 0.27 +2.5 2,631,410 - HP15_2492 0.28 +0.2 2,631,410 - HP15_2492 0.28 +1.5 2,631,410 - HP15_2492 0.28 +2.2 2,631,410 - HP15_2492 0.28 +0.5 2,631,595 - HP15_2492 0.52 +2.2 2,631,654 - HP15_2492 0.60 +2.4 2,631,691 - HP15_2492 0.65 -1.4 2,631,691 - HP15_2492 0.65 +2.0 2,631,701 - HP15_2492 0.66 +0.1
Or see this region's nucleotide sequence