Strain Fitness in Marinobacter adhaerens HP15 around HP15_2471

Experiment: L-Citrulline as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2468 and HP15_2469 overlap by 23 nucleotidesHP15_2469 and HP15_2470 overlap by 4 nucleotidesHP15_2470 and HP15_2471 overlap by 11 nucleotidesHP15_2471 and HP15_2472 are separated by 13 nucleotidesHP15_2472 and HP15_2473 are separated by 845 nucleotides HP15_2468: HP15_2468 - metalloprotease YbeY, at 2,608,711 to 2,609,058 _2468 HP15_2469: HP15_2469 - predicted metal-dependent hydrolase, at 2,609,036 to 2,609,170 _2469 HP15_2470: HP15_2470 - metal ion transporter, at 2,609,167 to 2,610,012 _2470 HP15_2471: HP15_2471 - apolipoprotein N-acyltransferase, at 2,610,002 to 2,611,564 _2471 HP15_2472: HP15_2472 - hypothetical protein, at 2,611,578 to 2,611,685 _2472 HP15_2473: HP15_2473 - leucyl-tRNA synthetase, at 2,612,531 to 2,615,116 _2473 Position (kb) 2610 2611 2612Strain fitness (log2 ratio) -2 -1 0 1at 2609.119 kb on + strand, within HP15_2469at 2609.156 kb on + strand, within HP15_2469at 2609.449 kb on + strand, within HP15_2470at 2609.685 kb on - strand, within HP15_2470at 2609.706 kb on - strand, within HP15_2470at 2609.726 kb on - strand, within HP15_2470at 2611.609 kb on - strand, within HP15_2472at 2611.619 kb on + strand, within HP15_2472at 2611.692 kb on - strandat 2611.697 kb on - strandat 2612.060 kb on + strandat 2612.147 kb on + strandat 2612.194 kb on - strandat 2612.280 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline as (N)
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2,609,119 + HP15_2469 0.61 +0.6
2,609,156 + HP15_2469 0.89 +0.2
2,609,449 + HP15_2470 0.33 -1.9
2,609,685 - HP15_2470 0.61 -0.2
2,609,706 - HP15_2470 0.64 -1.8
2,609,726 - HP15_2470 0.66 -0.9
2,611,609 - HP15_2472 0.29 +1.5
2,611,619 + HP15_2472 0.38 +1.5
2,611,692 - -1.3
2,611,697 - +1.1
2,612,060 + +0.4
2,612,147 + -0.8
2,612,194 - -0.4
2,612,280 - -0.3

Or see this region's nucleotide sequence