Strain Fitness in Marinobacter adhaerens HP15 around HP15_2106

Experiment: L-Citrulline as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2105 and HP15_2106 are separated by 9 nucleotidesHP15_2106 and HP15_2107 are separated by 220 nucleotides HP15_2105: HP15_2105 - response regulator receiver domain protein (CheY-), at 2,204,000 to 2,205,841 _2105 HP15_2106: HP15_2106 - conserved hypothetical protein, at 2,205,851 to 2,206,492 _2106 HP15_2107: HP15_2107 - cytochrome c oxidase, cbb3-type, subunit I, at 2,206,713 to 2,208,143 _2107 Position (kb) 2205 2206 2207Strain fitness (log2 ratio) -2 -1 0 1 2at 2204.893 kb on - strand, within HP15_2105at 2204.916 kb on + strand, within HP15_2105at 2204.984 kb on - strand, within HP15_2105at 2205.011 kb on + strand, within HP15_2105at 2205.076 kb on + strand, within HP15_2105at 2205.084 kb on - strand, within HP15_2105at 2205.084 kb on - strand, within HP15_2105at 2205.112 kb on - strand, within HP15_2105at 2205.141 kb on - strand, within HP15_2105at 2205.152 kb on + strand, within HP15_2105at 2205.182 kb on + strand, within HP15_2105at 2205.211 kb on + strand, within HP15_2105at 2205.321 kb on - strand, within HP15_2105at 2205.407 kb on + strand, within HP15_2105at 2205.432 kb on + strand, within HP15_2105at 2205.440 kb on - strand, within HP15_2105at 2205.440 kb on - strand, within HP15_2105at 2205.450 kb on - strand, within HP15_2105at 2205.482 kb on + strand, within HP15_2105at 2205.512 kb on - strand, within HP15_2105at 2205.514 kb on - strand, within HP15_2105at 2205.675 kb on + strandat 2205.683 kb on - strandat 2205.748 kb on - strandat 2205.773 kb on + strandat 2205.773 kb on + strandat 2205.781 kb on - strandat 2205.781 kb on - strandat 2205.781 kb on - strandat 2205.825 kb on - strandat 2205.825 kb on - strandat 2205.846 kb on - strandat 2205.880 kb on - strandat 2206.059 kb on + strand, within HP15_2106at 2206.208 kb on + strand, within HP15_2106at 2206.210 kb on + strand, within HP15_2106at 2206.243 kb on - strand, within HP15_2106at 2206.530 kb on - strandat 2206.634 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline as (N)
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2,204,893 - HP15_2105 0.48 +1.9
2,204,916 + HP15_2105 0.50 -0.5
2,204,984 - HP15_2105 0.53 +0.3
2,205,011 + HP15_2105 0.55 -0.3
2,205,076 + HP15_2105 0.58 +0.5
2,205,084 - HP15_2105 0.59 +1.5
2,205,084 - HP15_2105 0.59 -0.4
2,205,112 - HP15_2105 0.60 +0.1
2,205,141 - HP15_2105 0.62 -2.5
2,205,152 + HP15_2105 0.63 +0.1
2,205,182 + HP15_2105 0.64 -0.4
2,205,211 + HP15_2105 0.66 -0.0
2,205,321 - HP15_2105 0.72 +1.9
2,205,407 + HP15_2105 0.76 -0.4
2,205,432 + HP15_2105 0.78 +0.2
2,205,440 - HP15_2105 0.78 -1.2
2,205,440 - HP15_2105 0.78 +0.0
2,205,450 - HP15_2105 0.79 -0.4
2,205,482 + HP15_2105 0.80 -0.1
2,205,512 - HP15_2105 0.82 -0.4
2,205,514 - HP15_2105 0.82 +2.0
2,205,675 + -1.2
2,205,683 - +0.8
2,205,748 - +1.4
2,205,773 + -1.3
2,205,773 + -0.9
2,205,781 - +1.3
2,205,781 - -0.8
2,205,781 - +0.1
2,205,825 - +1.0
2,205,825 - +0.6
2,205,846 - +1.9
2,205,880 - -0.8
2,206,059 + HP15_2106 0.32 +1.2
2,206,208 + HP15_2106 0.56 +0.0
2,206,210 + HP15_2106 0.56 +2.4
2,206,243 - HP15_2106 0.61 +1.5
2,206,530 - +2.2
2,206,634 - +1.6

Or see this region's nucleotide sequence