Experiment: L-Citrulline as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2101 and HP15_2102 are separated by 11 nucleotides HP15_2102 and HP15_2103 are separated by 86 nucleotides HP15_2103 and HP15_2104 overlap by 4 nucleotides HP15_2104 and HP15_2105 are separated by 112 nucleotides
HP15_2101: HP15_2101 - membrane protein containing cytochrome c assembly protein, transmembrane region domain, at 2,200,291 to 2,202,186
_2101
HP15_2102: HP15_2102 - SirA family protein, at 2,202,198 to 2,202,437
_2102
HP15_2103: HP15_2103 - antibiotic biosynthesis monooxygenase, at 2,202,524 to 2,202,814
_2103
HP15_2104: HP15_2104 - putative RNA 2'-O-ribose methyltransferase, at 2,202,811 to 2,203,887
_2104
HP15_2105: HP15_2105 - response regulator receiver domain protein (CheY-), at 2,204,000 to 2,205,841
_2105
Position (kb)
2202
2203
2204 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2201.891 kb on - strand, within HP15_2101 at 2202.499 kb on - strand at 2202.572 kb on + strand, within HP15_2103 at 2202.604 kb on - strand, within HP15_2103 at 2202.672 kb on + strand, within HP15_2103 at 2202.877 kb on - strand at 2202.993 kb on + strand, within HP15_2104 at 2203.001 kb on - strand, within HP15_2104 at 2203.002 kb on - strand, within HP15_2104 at 2203.098 kb on - strand, within HP15_2104 at 2203.122 kb on + strand, within HP15_2104 at 2203.130 kb on - strand, within HP15_2104 at 2203.256 kb on - strand, within HP15_2104 at 2203.358 kb on + strand, within HP15_2104 at 2203.431 kb on + strand, within HP15_2104 at 2203.440 kb on - strand, within HP15_2104 at 2203.461 kb on + strand, within HP15_2104 at 2203.461 kb on + strand, within HP15_2104 at 2203.466 kb on + strand, within HP15_2104 at 2203.466 kb on + strand, within HP15_2104 at 2203.474 kb on - strand, within HP15_2104 at 2203.528 kb on + strand, within HP15_2104 at 2203.537 kb on + strand, within HP15_2104 at 2203.709 kb on - strand, within HP15_2104 at 2203.709 kb on - strand, within HP15_2104 at 2203.744 kb on - strand, within HP15_2104 at 2203.857 kb on - strand at 2204.059 kb on - strand at 2204.062 kb on + strand at 2204.070 kb on - strand at 2204.081 kb on + strand at 2204.081 kb on - strand at 2204.238 kb on + strand, within HP15_2105 at 2204.260 kb on + strand, within HP15_2105 at 2204.268 kb on - strand, within HP15_2105 at 2204.285 kb on - strand, within HP15_2105 at 2204.319 kb on + strand, within HP15_2105 at 2204.326 kb on - strand, within HP15_2105 at 2204.582 kb on + strand, within HP15_2105 at 2204.597 kb on - strand, within HP15_2105 at 2204.599 kb on + strand, within HP15_2105 at 2204.602 kb on - strand, within HP15_2105 at 2204.602 kb on - strand, within HP15_2105 at 2204.612 kb on + strand, within HP15_2105 at 2204.620 kb on - strand, within HP15_2105 at 2204.743 kb on - strand, within HP15_2105
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline as (N) remove 2,201,891 - HP15_2101 0.84 +2.1 2,202,499 - -0.1 2,202,572 + HP15_2103 0.16 +0.3 2,202,604 - HP15_2103 0.27 +1.4 2,202,672 + HP15_2103 0.51 -0.7 2,202,877 - -0.5 2,202,993 + HP15_2104 0.17 +1.4 2,203,001 - HP15_2104 0.18 -0.7 2,203,002 - HP15_2104 0.18 +1.3 2,203,098 - HP15_2104 0.27 +0.1 2,203,122 + HP15_2104 0.29 +1.1 2,203,130 - HP15_2104 0.30 -0.8 2,203,256 - HP15_2104 0.41 -0.7 2,203,358 + HP15_2104 0.51 -0.2 2,203,431 + HP15_2104 0.58 -0.1 2,203,440 - HP15_2104 0.58 -1.1 2,203,461 + HP15_2104 0.60 -0.4 2,203,461 + HP15_2104 0.60 +0.4 2,203,466 + HP15_2104 0.61 +0.9 2,203,466 + HP15_2104 0.61 -1.4 2,203,474 - HP15_2104 0.62 -0.7 2,203,528 + HP15_2104 0.67 -1.9 2,203,537 + HP15_2104 0.67 +0.2 2,203,709 - HP15_2104 0.83 -1.9 2,203,709 - HP15_2104 0.83 -1.2 2,203,744 - HP15_2104 0.87 -0.6 2,203,857 - +1.5 2,204,059 - +1.2 2,204,062 + -0.2 2,204,070 - +1.4 2,204,081 + -0.5 2,204,081 - -0.1 2,204,238 + HP15_2105 0.13 -0.3 2,204,260 + HP15_2105 0.14 -0.5 2,204,268 - HP15_2105 0.15 -0.3 2,204,285 - HP15_2105 0.15 -1.2 2,204,319 + HP15_2105 0.17 +0.4 2,204,326 - HP15_2105 0.18 +0.5 2,204,582 + HP15_2105 0.32 +1.9 2,204,597 - HP15_2105 0.32 +1.3 2,204,599 + HP15_2105 0.33 -0.2 2,204,602 - HP15_2105 0.33 +1.4 2,204,602 - HP15_2105 0.33 +1.1 2,204,612 + HP15_2105 0.33 +0.9 2,204,620 - HP15_2105 0.34 +0.9 2,204,743 - HP15_2105 0.40 -0.7
Or see this region's nucleotide sequence