Strain Fitness in Marinobacter adhaerens HP15 around HP15_1707

Experiment: L-Citrulline as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1706 and HP15_1707 are separated by 30 nucleotidesHP15_1707 and HP15_1708 are separated by 27 nucleotidesHP15_1708 and HP15_1709 are separated by 163 nucleotides HP15_1706: HP15_1706 - alpha-glucan phosphorylase, at 1,799,886 to 1,802,420 _1706 HP15_1707: HP15_1707 - short-chain dehydrogenase/reductase SDR, at 1,802,451 to 1,803,221 _1707 HP15_1708: HP15_1708 - type IV pilus assembly PilZ, at 1,803,249 to 1,803,545 _1708 HP15_1709: HP15_1709 - 4-alpha-glucanotransferase, at 1,803,709 to 1,805,202 _1709 Position (kb) 1802 1803 1804Strain fitness (log2 ratio) -3 -2 -1 0 1at 1801.521 kb on + strand, within HP15_1706at 1801.563 kb on + strand, within HP15_1706at 1801.591 kb on + strand, within HP15_1706at 1801.594 kb on + strand, within HP15_1706at 1801.731 kb on - strand, within HP15_1706at 1801.837 kb on + strand, within HP15_1706at 1802.001 kb on + strand, within HP15_1706at 1802.061 kb on - strand, within HP15_1706at 1802.081 kb on + strand, within HP15_1706at 1802.118 kb on - strand, within HP15_1706at 1802.199 kb on - strandat 1802.199 kb on - strandat 1802.269 kb on - strandat 1802.407 kb on - strandat 1802.415 kb on + strandat 1802.440 kb on - strandat 1802.461 kb on + strandat 1802.491 kb on - strandat 1802.698 kb on + strand, within HP15_1707at 1803.213 kb on - strandat 1803.227 kb on + strandat 1803.235 kb on + strandat 1803.243 kb on - strandat 1803.397 kb on + strand, within HP15_1708at 1803.399 kb on - strand, within HP15_1708at 1803.503 kb on - strand, within HP15_1708at 1803.844 kb on + strandat 1804.000 kb on + strand, within HP15_1709at 1804.007 kb on + strand, within HP15_1709at 1804.056 kb on - strand, within HP15_1709at 1804.109 kb on + strand, within HP15_1709at 1804.207 kb on + strand, within HP15_1709

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline as (N)
remove
1,801,521 + HP15_1706 0.64 +0.6
1,801,563 + HP15_1706 0.66 -1.4
1,801,591 + HP15_1706 0.67 +0.5
1,801,594 + HP15_1706 0.67 -0.5
1,801,731 - HP15_1706 0.73 +0.0
1,801,837 + HP15_1706 0.77 -0.7
1,802,001 + HP15_1706 0.83 -0.4
1,802,061 - HP15_1706 0.86 -1.5
1,802,081 + HP15_1706 0.87 +1.2
1,802,118 - HP15_1706 0.88 +1.7
1,802,199 - -0.3
1,802,199 - +1.7
1,802,269 - +0.1
1,802,407 - -0.1
1,802,415 + -0.4
1,802,440 - -0.7
1,802,461 + -0.8
1,802,491 - +1.0
1,802,698 + HP15_1707 0.32 +1.7
1,803,213 - -0.7
1,803,227 + -1.0
1,803,235 + +0.6
1,803,243 - -0.7
1,803,397 + HP15_1708 0.50 +1.5
1,803,399 - HP15_1708 0.51 -0.5
1,803,503 - HP15_1708 0.86 -0.3
1,803,844 + -0.7
1,804,000 + HP15_1709 0.19 -0.3
1,804,007 + HP15_1709 0.20 -2.9
1,804,056 - HP15_1709 0.23 -0.1
1,804,109 + HP15_1709 0.27 -0.6
1,804,207 + HP15_1709 0.33 -0.3

Or see this region's nucleotide sequence