Experiment: L-Citrulline as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_15 and HP15_16 are separated by 7 nucleotides HP15_16 and HP15_17 are separated by 663 nucleotides HP15_17 and HP15_18 overlap by 17 nucleotides
HP15_15: HP15_15 - short chain dehydrogenase/reductase, at 17,567 to 18,214
_15
HP15_16: HP15_16 - glyoxalase/bleomycin resistance protein/dioxygenase-like protein, at 18,222 to 18,392
_16
HP15_17: HP15_17 - FAD-dependent oxidoreductase, at 19,056 to 20,900
_17
HP15_18: HP15_18 - cytochrome P450 monooxygenase, at 20,884 to 22,161
_18
Position (kb) 19
20
21 Strain fitness (log2 ratio) -2
-1
0
1
2 at 18.107 kb on + strand, within HP15_15 at 18.115 kb on - strand, within HP15_15 at 18.155 kb on + strand at 18.211 kb on - strand at 18.217 kb on + strand at 18.374 kb on + strand, within HP15_16 at 18.374 kb on + strand, within HP15_16 at 18.374 kb on + strand, within HP15_16 at 18.379 kb on + strand at 18.382 kb on - strand at 18.382 kb on - strand at 18.382 kb on - strand at 18.384 kb on + strand at 18.392 kb on - strand at 18.392 kb on - strand at 18.392 kb on - strand at 18.426 kb on + strand at 18.434 kb on - strand at 18.434 kb on - strand at 18.445 kb on + strand at 18.459 kb on + strand at 18.466 kb on - strand at 18.466 kb on - strand at 18.466 kb on - strand at 18.556 kb on - strand at 18.577 kb on - strand at 18.596 kb on + strand at 18.615 kb on - strand at 18.673 kb on + strand at 18.694 kb on - strand at 18.761 kb on - strand at 18.773 kb on + strand at 18.774 kb on + strand at 18.785 kb on + strand at 18.787 kb on + strand at 18.798 kb on - strand at 18.938 kb on + strand at 19.063 kb on + strand at 19.141 kb on + strand at 19.150 kb on + strand at 19.259 kb on + strand, within HP15_17 at 19.260 kb on + strand, within HP15_17 at 19.301 kb on - strand, within HP15_17 at 19.306 kb on - strand, within HP15_17 at 19.329 kb on - strand, within HP15_17 at 19.424 kb on - strand, within HP15_17 at 19.510 kb on - strand, within HP15_17 at 19.517 kb on + strand, within HP15_17 at 19.523 kb on - strand, within HP15_17 at 19.533 kb on - strand, within HP15_17 at 19.628 kb on + strand, within HP15_17 at 19.654 kb on + strand, within HP15_17 at 19.654 kb on + strand, within HP15_17 at 19.746 kb on + strand, within HP15_17 at 19.766 kb on + strand, within HP15_17 at 19.856 kb on - strand, within HP15_17 at 19.935 kb on - strand, within HP15_17 at 20.005 kb on + strand, within HP15_17 at 20.005 kb on - strand, within HP15_17 at 20.014 kb on - strand, within HP15_17 at 20.064 kb on + strand, within HP15_17 at 20.084 kb on + strand, within HP15_17 at 20.084 kb on + strand, within HP15_17 at 20.104 kb on + strand, within HP15_17 at 20.133 kb on + strand, within HP15_17 at 20.152 kb on + strand, within HP15_17 at 20.167 kb on - strand, within HP15_17 at 20.230 kb on + strand, within HP15_17 at 20.238 kb on - strand, within HP15_17 at 20.271 kb on - strand, within HP15_17 at 20.285 kb on - strand, within HP15_17 at 20.313 kb on + strand, within HP15_17 at 20.358 kb on - strand, within HP15_17 at 20.379 kb on + strand, within HP15_17 at 20.395 kb on + strand, within HP15_17 at 20.403 kb on - strand, within HP15_17 at 20.463 kb on + strand, within HP15_17 at 20.513 kb on + strand, within HP15_17 at 20.516 kb on - strand, within HP15_17 at 20.520 kb on - strand, within HP15_17 at 20.617 kb on + strand, within HP15_17 at 20.634 kb on + strand, within HP15_17 at 20.634 kb on + strand, within HP15_17 at 20.635 kb on - strand, within HP15_17 at 20.665 kb on + strand, within HP15_17 at 20.701 kb on - strand, within HP15_17 at 20.708 kb on - strand, within HP15_17 at 20.737 kb on + strand at 20.808 kb on - strand at 20.925 kb on - strand at 20.966 kb on + strand at 20.967 kb on - strand at 20.974 kb on - strand at 20.974 kb on - strand at 20.974 kb on - strand at 20.974 kb on - strand at 20.994 kb on + strand at 21.002 kb on - strand at 21.032 kb on + strand, within HP15_18 at 21.032 kb on + strand, within HP15_18 at 21.057 kb on + strand, within HP15_18 at 21.077 kb on + strand, within HP15_18 at 21.102 kb on - strand, within HP15_18 at 21.164 kb on - strand, within HP15_18 at 21.179 kb on + strand, within HP15_18 at 21.213 kb on - strand, within HP15_18 at 21.213 kb on - strand, within HP15_18 at 21.213 kb on - strand, within HP15_18 at 21.266 kb on + strand, within HP15_18 at 21.303 kb on + strand, within HP15_18 at 21.345 kb on - strand, within HP15_18 at 21.378 kb on - strand, within HP15_18 at 21.439 kb on + strand, within HP15_18 at 21.447 kb on - strand, within HP15_18 at 21.447 kb on - strand, within HP15_18 at 21.447 kb on - strand, within HP15_18 at 21.447 kb on - strand, within HP15_18 at 21.458 kb on - strand, within HP15_18 at 21.550 kb on + strand, within HP15_18 at 21.558 kb on - strand, within HP15_18 at 21.600 kb on + strand, within HP15_18 at 21.628 kb on + strand, within HP15_18 at 21.643 kb on - strand, within HP15_18 at 21.644 kb on - strand, within HP15_18 at 21.708 kb on + strand, within HP15_18 at 21.715 kb on + strand, within HP15_18 at 21.809 kb on - strand, within HP15_18
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline as (N) remove 18,107 + HP15_15 0.83 +2.1 18,115 - HP15_15 0.85 +1.7 18,155 + -0.4 18,211 - -0.3 18,217 + -0.1 18,374 + HP15_16 0.89 +2.1 18,374 + HP15_16 0.89 +1.2 18,374 + HP15_16 0.89 +0.1 18,379 + +2.0 18,382 - -1.8 18,382 - -1.0 18,382 - -2.6 18,384 + -0.4 18,392 - +1.6 18,392 - +0.2 18,392 - +1.5 18,426 + +1.5 18,434 - -0.8 18,434 - -0.7 18,445 + -0.2 18,459 + -2.2 18,466 - -0.7 18,466 - +1.9 18,466 - +1.0 18,556 - -0.4 18,577 - +0.0 18,596 + -0.5 18,615 - -1.0 18,673 + -0.5 18,694 - +0.0 18,761 - -0.7 18,773 + +0.1 18,774 + -0.0 18,785 + +0.8 18,787 + +1.4 18,798 - +0.5 18,938 + +2.0 19,063 + +1.0 19,141 + -1.1 19,150 + +0.0 19,259 + HP15_17 0.11 -1.3 19,260 + HP15_17 0.11 +0.6 19,301 - HP15_17 0.13 -0.0 19,306 - HP15_17 0.14 +0.0 19,329 - HP15_17 0.15 +1.2 19,424 - HP15_17 0.20 +0.0 19,510 - HP15_17 0.25 -0.1 19,517 + HP15_17 0.25 -1.1 19,523 - HP15_17 0.25 +2.2 19,533 - HP15_17 0.26 -1.7 19,628 + HP15_17 0.31 +1.6 19,654 + HP15_17 0.32 -0.4 19,654 + HP15_17 0.32 +0.8 19,746 + HP15_17 0.37 -0.5 19,766 + HP15_17 0.38 -0.4 19,856 - HP15_17 0.43 +0.5 19,935 - HP15_17 0.48 -1.1 20,005 + HP15_17 0.51 +0.3 20,005 - HP15_17 0.51 +1.4 20,014 - HP15_17 0.52 -1.0 20,064 + HP15_17 0.55 +1.2 20,084 + HP15_17 0.56 +0.1 20,084 + HP15_17 0.56 +1.1 20,104 + HP15_17 0.57 +1.8 20,133 + HP15_17 0.58 +1.3 20,152 + HP15_17 0.59 -0.2 20,167 - HP15_17 0.60 -0.6 20,230 + HP15_17 0.64 +1.9 20,238 - HP15_17 0.64 -0.8 20,271 - HP15_17 0.66 -0.5 20,285 - HP15_17 0.67 -0.5 20,313 + HP15_17 0.68 -1.5 20,358 - HP15_17 0.71 +2.3 20,379 + HP15_17 0.72 +1.6 20,395 + HP15_17 0.73 -0.2 20,403 - HP15_17 0.73 -0.1 20,463 + HP15_17 0.76 -0.1 20,513 + HP15_17 0.79 -0.8 20,516 - HP15_17 0.79 +1.6 20,520 - HP15_17 0.79 -0.8 20,617 + HP15_17 0.85 +0.3 20,634 + HP15_17 0.86 -0.8 20,634 + HP15_17 0.86 +0.6 20,635 - HP15_17 0.86 +1.7 20,665 + HP15_17 0.87 -0.5 20,701 - HP15_17 0.89 +1.3 20,708 - HP15_17 0.90 +2.6 20,737 + +2.2 20,808 - +1.5 20,925 - -0.4 20,966 + -0.2 20,967 - -0.3 20,974 - -0.6 20,974 - +1.0 20,974 - +0.2 20,974 - -0.4 20,994 + +1.5 21,002 - -0.6 21,032 + HP15_18 0.12 +1.1 21,032 + HP15_18 0.12 +1.5 21,057 + HP15_18 0.14 +2.1 21,077 + HP15_18 0.15 -0.3 21,102 - HP15_18 0.17 -0.2 21,164 - HP15_18 0.22 -0.1 21,179 + HP15_18 0.23 +0.7 21,213 - HP15_18 0.26 +1.3 21,213 - HP15_18 0.26 -0.9 21,213 - HP15_18 0.26 -1.6 21,266 + HP15_18 0.30 -2.0 21,303 + HP15_18 0.33 -2.3 21,345 - HP15_18 0.36 -0.2 21,378 - HP15_18 0.39 +1.6 21,439 + HP15_18 0.43 +1.6 21,447 - HP15_18 0.44 +1.6 21,447 - HP15_18 0.44 +2.4 21,447 - HP15_18 0.44 -0.0 21,447 - HP15_18 0.44 -0.3 21,458 - HP15_18 0.45 +1.4 21,550 + HP15_18 0.52 +2.0 21,558 - HP15_18 0.53 -1.6 21,600 + HP15_18 0.56 -0.6 21,628 + HP15_18 0.58 -0.1 21,643 - HP15_18 0.59 -2.0 21,644 - HP15_18 0.59 +0.6 21,708 + HP15_18 0.64 +1.4 21,715 + HP15_18 0.65 +1.6 21,809 - HP15_18 0.72 +1.2
Or see this region's nucleotide sequence