Experiment: L-Citrulline as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1612 and HP15_1613 are separated by 38 nucleotides HP15_1613 and HP15_1614 overlap by 8 nucleotides
HP15_1612: HP15_1612 - protein containing FAD-dependent pyridine nucleotide-disulfide oxidoreductase / Pyridine nucleotide-disulfide oxidoreductase, dimerization, at 1,707,410 to 1,708,771
_1612
HP15_1613: HP15_1613 - sensory box histidine kinase/response regulator, at 1,708,810 to 1,710,753
_1613
HP15_1614: HP15_1614 - conserved hypothetical protein, at 1,710,746 to 1,711,618
_1614
Position (kb)
1708
1709
1710
1711 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 1707.944 kb on + strand, within HP15_1612 at 1707.952 kb on - strand, within HP15_1612 at 1707.981 kb on + strand, within HP15_1612 at 1708.148 kb on + strand, within HP15_1612 at 1708.173 kb on + strand, within HP15_1612 at 1708.229 kb on - strand, within HP15_1612 at 1708.229 kb on - strand, within HP15_1612 at 1708.285 kb on + strand, within HP15_1612 at 1708.321 kb on - strand, within HP15_1612 at 1708.356 kb on + strand, within HP15_1612 at 1708.366 kb on + strand, within HP15_1612 at 1708.381 kb on - strand, within HP15_1612 at 1708.521 kb on - strand, within HP15_1612 at 1708.707 kb on - strand at 1708.815 kb on + strand at 1708.862 kb on + strand at 1708.870 kb on - strand at 1709.006 kb on - strand, within HP15_1613 at 1709.051 kb on - strand, within HP15_1613 at 1709.069 kb on + strand, within HP15_1613 at 1709.074 kb on + strand, within HP15_1613 at 1709.293 kb on - strand, within HP15_1613 at 1709.293 kb on - strand, within HP15_1613 at 1709.293 kb on - strand, within HP15_1613 at 1709.303 kb on - strand, within HP15_1613 at 1709.327 kb on + strand, within HP15_1613 at 1709.355 kb on + strand, within HP15_1613 at 1709.411 kb on - strand, within HP15_1613 at 1709.615 kb on - strand, within HP15_1613 at 1709.664 kb on - strand, within HP15_1613 at 1709.716 kb on + strand, within HP15_1613 at 1709.760 kb on - strand, within HP15_1613 at 1709.819 kb on + strand, within HP15_1613 at 1709.819 kb on - strand, within HP15_1613 at 1709.827 kb on - strand, within HP15_1613 at 1709.829 kb on - strand, within HP15_1613 at 1709.888 kb on + strand, within HP15_1613 at 1709.888 kb on - strand, within HP15_1613 at 1709.890 kb on + strand, within HP15_1613 at 1709.890 kb on + strand, within HP15_1613 at 1709.898 kb on - strand, within HP15_1613 at 1709.915 kb on - strand, within HP15_1613 at 1710.001 kb on - strand, within HP15_1613 at 1710.008 kb on + strand, within HP15_1613 at 1710.016 kb on - strand, within HP15_1613 at 1710.216 kb on + strand, within HP15_1613 at 1710.291 kb on - strand, within HP15_1613 at 1710.291 kb on - strand, within HP15_1613 at 1710.291 kb on - strand, within HP15_1613 at 1710.301 kb on - strand, within HP15_1613 at 1710.418 kb on + strand, within HP15_1613 at 1710.423 kb on + strand, within HP15_1613 at 1710.648 kb on - strand at 1710.655 kb on - strand at 1710.751 kb on + strand at 1710.869 kb on + strand, within HP15_1614 at 1710.990 kb on + strand, within HP15_1614 at 1711.097 kb on + strand, within HP15_1614 at 1711.219 kb on + strand, within HP15_1614 at 1711.291 kb on - strand, within HP15_1614 at 1711.313 kb on + strand, within HP15_1614 at 1711.319 kb on - strand, within HP15_1614 at 1711.626 kb on - strand at 1711.717 kb on + strand at 1711.718 kb on - strand at 1711.735 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline as (N) remove 1,707,944 + HP15_1612 0.39 -0.7 1,707,952 - HP15_1612 0.40 +0.8 1,707,981 + HP15_1612 0.42 -0.2 1,708,148 + HP15_1612 0.54 +2.0 1,708,173 + HP15_1612 0.56 +0.3 1,708,229 - HP15_1612 0.60 -1.3 1,708,229 - HP15_1612 0.60 -0.1 1,708,285 + HP15_1612 0.64 -0.3 1,708,321 - HP15_1612 0.67 +1.3 1,708,356 + HP15_1612 0.69 -0.7 1,708,366 + HP15_1612 0.70 -0.4 1,708,381 - HP15_1612 0.71 -0.6 1,708,521 - HP15_1612 0.82 +1.4 1,708,707 - +0.8 1,708,815 + -0.6 1,708,862 + -0.3 1,708,870 - -0.0 1,709,006 - HP15_1613 0.10 -0.3 1,709,051 - HP15_1613 0.12 -0.7 1,709,069 + HP15_1613 0.13 +0.3 1,709,074 + HP15_1613 0.14 +0.5 1,709,293 - HP15_1613 0.25 +1.8 1,709,293 - HP15_1613 0.25 +5.1 1,709,293 - HP15_1613 0.25 -0.9 1,709,303 - HP15_1613 0.25 +0.6 1,709,327 + HP15_1613 0.27 +1.3 1,709,355 + HP15_1613 0.28 +1.6 1,709,411 - HP15_1613 0.31 -0.1 1,709,615 - HP15_1613 0.41 +1.6 1,709,664 - HP15_1613 0.44 +1.9 1,709,716 + HP15_1613 0.47 -0.4 1,709,760 - HP15_1613 0.49 -0.2 1,709,819 + HP15_1613 0.52 -1.9 1,709,819 - HP15_1613 0.52 -1.5 1,709,827 - HP15_1613 0.52 -0.2 1,709,829 - HP15_1613 0.52 +1.5 1,709,888 + HP15_1613 0.55 +0.3 1,709,888 - HP15_1613 0.55 +2.3 1,709,890 + HP15_1613 0.56 +2.0 1,709,890 + HP15_1613 0.56 +0.2 1,709,898 - HP15_1613 0.56 +1.7 1,709,915 - HP15_1613 0.57 -0.0 1,710,001 - HP15_1613 0.61 -0.1 1,710,008 + HP15_1613 0.62 -1.6 1,710,016 - HP15_1613 0.62 -0.5 1,710,216 + HP15_1613 0.72 -0.4 1,710,291 - HP15_1613 0.76 -0.4 1,710,291 - HP15_1613 0.76 -1.6 1,710,291 - HP15_1613 0.76 -0.8 1,710,301 - HP15_1613 0.77 +0.2 1,710,418 + HP15_1613 0.83 -0.9 1,710,423 + HP15_1613 0.83 -1.4 1,710,648 - +3.9 1,710,655 - +1.8 1,710,751 + -0.6 1,710,869 + HP15_1614 0.14 +1.9 1,710,990 + HP15_1614 0.28 -1.3 1,711,097 + HP15_1614 0.40 +1.2 1,711,219 + HP15_1614 0.54 -1.6 1,711,291 - HP15_1614 0.62 +1.7 1,711,313 + HP15_1614 0.65 +0.9 1,711,319 - HP15_1614 0.66 -0.3 1,711,626 - -2.0 1,711,717 + -0.9 1,711,718 - +1.0 1,711,735 - +2.0
Or see this region's nucleotide sequence