Strain Fitness in Marinobacter adhaerens HP15 around HP15_1354

Experiment: L-Citrulline as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1352 and HP15_1353 are separated by 70 nucleotidesHP15_1353 and HP15_1354 are separated by 35 nucleotidesHP15_1354 and HP15_1355 are separated by 15 nucleotides HP15_1352: HP15_1352 - peptidase S16, lon domain protein, at 1,420,436 to 1,422,835 _1352 HP15_1353: HP15_1353 - UspA domain protein, at 1,422,906 to 1,423,694 _1353 HP15_1354: HP15_1354 - divalent heavy-metal cations transporter, at 1,423,730 to 1,424,449 _1354 HP15_1355: HP15_1355 - cell division protein FtsH, at 1,424,465 to 1,426,378 _1355 Position (kb) 1423 1424 1425Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1422.877 kb on + strandat 1422.916 kb on - strandat 1422.916 kb on - strandat 1422.916 kb on - strandat 1422.926 kb on - strandat 1422.998 kb on + strand, within HP15_1353at 1423.121 kb on + strand, within HP15_1353at 1423.254 kb on - strand, within HP15_1353at 1423.351 kb on + strand, within HP15_1353at 1423.359 kb on - strand, within HP15_1353at 1423.359 kb on - strand, within HP15_1353at 1423.361 kb on - strand, within HP15_1353at 1423.398 kb on - strand, within HP15_1353at 1423.406 kb on - strand, within HP15_1353at 1423.461 kb on + strand, within HP15_1353at 1423.537 kb on + strand, within HP15_1353at 1423.645 kb on - strandat 1423.663 kb on + strandat 1423.742 kb on - strandat 1423.937 kb on - strand, within HP15_1354at 1423.946 kb on - strand, within HP15_1354at 1424.040 kb on - strand, within HP15_1354at 1424.106 kb on - strand, within HP15_1354at 1424.113 kb on + strand, within HP15_1354at 1424.128 kb on - strand, within HP15_1354at 1424.155 kb on + strand, within HP15_1354at 1424.204 kb on - strand, within HP15_1354at 1424.212 kb on + strand, within HP15_1354at 1424.240 kb on + strand, within HP15_1354at 1424.288 kb on + strand, within HP15_1354at 1424.367 kb on + strand, within HP15_1354at 1424.410 kb on + strandat 1424.415 kb on + strandat 1424.415 kb on + strandat 1424.423 kb on - strandat 1424.423 kb on - strandat 1424.423 kb on - strandat 1424.438 kb on - strandat 1424.544 kb on + strandat 1424.804 kb on - strand, within HP15_1355at 1424.822 kb on - strand, within HP15_1355at 1424.895 kb on + strand, within HP15_1355at 1424.929 kb on - strand, within HP15_1355at 1424.992 kb on + strand, within HP15_1355at 1424.992 kb on + strand, within HP15_1355at 1425.047 kb on - strand, within HP15_1355at 1425.049 kb on + strand, within HP15_1355at 1425.064 kb on - strand, within HP15_1355at 1425.085 kb on + strand, within HP15_1355at 1425.114 kb on - strand, within HP15_1355at 1425.214 kb on + strand, within HP15_1355at 1425.344 kb on - strand, within HP15_1355at 1425.349 kb on - strand, within HP15_1355at 1425.349 kb on - strand, within HP15_1355at 1425.354 kb on - strand, within HP15_1355

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline as (N)
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1,422,877 + -0.8
1,422,916 - +0.1
1,422,916 - -1.2
1,422,916 - -0.6
1,422,926 - +0.8
1,422,998 + HP15_1353 0.12 -0.9
1,423,121 + HP15_1353 0.27 -0.6
1,423,254 - HP15_1353 0.44 -0.1
1,423,351 + HP15_1353 0.56 -0.6
1,423,359 - HP15_1353 0.57 +1.4
1,423,359 - HP15_1353 0.57 -0.4
1,423,361 - HP15_1353 0.58 +1.5
1,423,398 - HP15_1353 0.62 +0.6
1,423,406 - HP15_1353 0.63 -0.0
1,423,461 + HP15_1353 0.70 +1.3
1,423,537 + HP15_1353 0.80 -0.4
1,423,645 - -0.7
1,423,663 + +1.3
1,423,742 - +0.2
1,423,937 - HP15_1354 0.29 -0.3
1,423,946 - HP15_1354 0.30 -0.7
1,424,040 - HP15_1354 0.43 -1.0
1,424,106 - HP15_1354 0.52 -0.2
1,424,113 + HP15_1354 0.53 -0.4
1,424,128 - HP15_1354 0.55 +0.1
1,424,155 + HP15_1354 0.59 -0.2
1,424,204 - HP15_1354 0.66 +0.3
1,424,212 + HP15_1354 0.67 +2.8
1,424,240 + HP15_1354 0.71 -0.5
1,424,288 + HP15_1354 0.78 +1.6
1,424,367 + HP15_1354 0.88 -1.2
1,424,410 + -1.2
1,424,415 + -0.6
1,424,415 + -0.4
1,424,423 - -0.8
1,424,423 - -0.9
1,424,423 - -2.2
1,424,438 - +1.6
1,424,544 + +0.0
1,424,804 - HP15_1355 0.18 +0.1
1,424,822 - HP15_1355 0.19 +0.4
1,424,895 + HP15_1355 0.22 +1.2
1,424,929 - HP15_1355 0.24 +0.5
1,424,992 + HP15_1355 0.28 +0.1
1,424,992 + HP15_1355 0.28 -1.1
1,425,047 - HP15_1355 0.30 +1.4
1,425,049 + HP15_1355 0.31 -0.9
1,425,064 - HP15_1355 0.31 +0.0
1,425,085 + HP15_1355 0.32 +1.1
1,425,114 - HP15_1355 0.34 +1.1
1,425,214 + HP15_1355 0.39 -0.8
1,425,344 - HP15_1355 0.46 -1.3
1,425,349 - HP15_1355 0.46 +1.8
1,425,349 - HP15_1355 0.46 +2.4
1,425,354 - HP15_1355 0.46 +1.3

Or see this region's nucleotide sequence