Experiment: L-Citrulline as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1352 and HP15_1353 are separated by 70 nucleotides HP15_1353 and HP15_1354 are separated by 35 nucleotides HP15_1354 and HP15_1355 are separated by 15 nucleotides
HP15_1352: HP15_1352 - peptidase S16, lon domain protein, at 1,420,436 to 1,422,835
_1352
HP15_1353: HP15_1353 - UspA domain protein, at 1,422,906 to 1,423,694
_1353
HP15_1354: HP15_1354 - divalent heavy-metal cations transporter, at 1,423,730 to 1,424,449
_1354
HP15_1355: HP15_1355 - cell division protein FtsH, at 1,424,465 to 1,426,378
_1355
Position (kb)
1423
1424
1425 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1422.877 kb on + strand at 1422.916 kb on - strand at 1422.916 kb on - strand at 1422.916 kb on - strand at 1422.926 kb on - strand at 1422.998 kb on + strand, within HP15_1353 at 1423.121 kb on + strand, within HP15_1353 at 1423.254 kb on - strand, within HP15_1353 at 1423.351 kb on + strand, within HP15_1353 at 1423.359 kb on - strand, within HP15_1353 at 1423.359 kb on - strand, within HP15_1353 at 1423.361 kb on - strand, within HP15_1353 at 1423.398 kb on - strand, within HP15_1353 at 1423.406 kb on - strand, within HP15_1353 at 1423.461 kb on + strand, within HP15_1353 at 1423.537 kb on + strand, within HP15_1353 at 1423.645 kb on - strand at 1423.663 kb on + strand at 1423.742 kb on - strand at 1423.937 kb on - strand, within HP15_1354 at 1423.946 kb on - strand, within HP15_1354 at 1424.040 kb on - strand, within HP15_1354 at 1424.106 kb on - strand, within HP15_1354 at 1424.113 kb on + strand, within HP15_1354 at 1424.128 kb on - strand, within HP15_1354 at 1424.155 kb on + strand, within HP15_1354 at 1424.204 kb on - strand, within HP15_1354 at 1424.212 kb on + strand, within HP15_1354 at 1424.240 kb on + strand, within HP15_1354 at 1424.288 kb on + strand, within HP15_1354 at 1424.367 kb on + strand, within HP15_1354 at 1424.410 kb on + strand at 1424.415 kb on + strand at 1424.415 kb on + strand at 1424.423 kb on - strand at 1424.423 kb on - strand at 1424.423 kb on - strand at 1424.438 kb on - strand at 1424.544 kb on + strand at 1424.804 kb on - strand, within HP15_1355 at 1424.822 kb on - strand, within HP15_1355 at 1424.895 kb on + strand, within HP15_1355 at 1424.929 kb on - strand, within HP15_1355 at 1424.992 kb on + strand, within HP15_1355 at 1424.992 kb on + strand, within HP15_1355 at 1425.047 kb on - strand, within HP15_1355 at 1425.049 kb on + strand, within HP15_1355 at 1425.064 kb on - strand, within HP15_1355 at 1425.085 kb on + strand, within HP15_1355 at 1425.114 kb on - strand, within HP15_1355 at 1425.214 kb on + strand, within HP15_1355 at 1425.344 kb on - strand, within HP15_1355 at 1425.349 kb on - strand, within HP15_1355 at 1425.349 kb on - strand, within HP15_1355 at 1425.354 kb on - strand, within HP15_1355
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline as (N) remove 1,422,877 + -0.8 1,422,916 - +0.1 1,422,916 - -1.2 1,422,916 - -0.6 1,422,926 - +0.8 1,422,998 + HP15_1353 0.12 -0.9 1,423,121 + HP15_1353 0.27 -0.6 1,423,254 - HP15_1353 0.44 -0.1 1,423,351 + HP15_1353 0.56 -0.6 1,423,359 - HP15_1353 0.57 +1.4 1,423,359 - HP15_1353 0.57 -0.4 1,423,361 - HP15_1353 0.58 +1.5 1,423,398 - HP15_1353 0.62 +0.6 1,423,406 - HP15_1353 0.63 -0.0 1,423,461 + HP15_1353 0.70 +1.3 1,423,537 + HP15_1353 0.80 -0.4 1,423,645 - -0.7 1,423,663 + +1.3 1,423,742 - +0.2 1,423,937 - HP15_1354 0.29 -0.3 1,423,946 - HP15_1354 0.30 -0.7 1,424,040 - HP15_1354 0.43 -1.0 1,424,106 - HP15_1354 0.52 -0.2 1,424,113 + HP15_1354 0.53 -0.4 1,424,128 - HP15_1354 0.55 +0.1 1,424,155 + HP15_1354 0.59 -0.2 1,424,204 - HP15_1354 0.66 +0.3 1,424,212 + HP15_1354 0.67 +2.8 1,424,240 + HP15_1354 0.71 -0.5 1,424,288 + HP15_1354 0.78 +1.6 1,424,367 + HP15_1354 0.88 -1.2 1,424,410 + -1.2 1,424,415 + -0.6 1,424,415 + -0.4 1,424,423 - -0.8 1,424,423 - -0.9 1,424,423 - -2.2 1,424,438 - +1.6 1,424,544 + +0.0 1,424,804 - HP15_1355 0.18 +0.1 1,424,822 - HP15_1355 0.19 +0.4 1,424,895 + HP15_1355 0.22 +1.2 1,424,929 - HP15_1355 0.24 +0.5 1,424,992 + HP15_1355 0.28 +0.1 1,424,992 + HP15_1355 0.28 -1.1 1,425,047 - HP15_1355 0.30 +1.4 1,425,049 + HP15_1355 0.31 -0.9 1,425,064 - HP15_1355 0.31 +0.0 1,425,085 + HP15_1355 0.32 +1.1 1,425,114 - HP15_1355 0.34 +1.1 1,425,214 + HP15_1355 0.39 -0.8 1,425,344 - HP15_1355 0.46 -1.3 1,425,349 - HP15_1355 0.46 +1.8 1,425,349 - HP15_1355 0.46 +2.4 1,425,354 - HP15_1355 0.46 +1.3
Or see this region's nucleotide sequence