Experiment: L-Citrulline as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1349 and HP15_1350 overlap by 4 nucleotides HP15_1350 and HP15_1351 overlap by 4 nucleotides HP15_1351 and HP15_1352 are separated by 38 nucleotides
HP15_1349: HP15_1349 - membrane-fusion protein, at 1,417,406 to 1,418,332
_1349
HP15_1350: HP15_1350 - ATP-binding component of a transport system, at 1,418,329 to 1,419,255
_1350
HP15_1351: HP15_1351 - ABC-type multidrug transport system, permease component, at 1,419,252 to 1,420,397
_1351
HP15_1352: HP15_1352 - peptidase S16, lon domain protein, at 1,420,436 to 1,422,835
_1352
Position (kb)
1419
1420
1421 Strain fitness (log2 ratio)
-1
0
1
2 at 1418.340 kb on + strand at 1418.789 kb on + strand, within HP15_1350 at 1418.797 kb on - strand, within HP15_1350 at 1418.924 kb on - strand, within HP15_1350 at 1419.008 kb on + strand, within HP15_1350 at 1419.108 kb on + strand, within HP15_1350 at 1419.116 kb on - strand, within HP15_1350 at 1419.249 kb on + strand at 1419.259 kb on + strand at 1419.299 kb on - strand at 1419.378 kb on - strand, within HP15_1351 at 1419.539 kb on + strand, within HP15_1351 at 1419.701 kb on - strand, within HP15_1351 at 1419.771 kb on - strand, within HP15_1351 at 1419.771 kb on - strand, within HP15_1351 at 1419.779 kb on + strand, within HP15_1351 at 1419.836 kb on - strand, within HP15_1351 at 1419.859 kb on + strand, within HP15_1351 at 1419.942 kb on - strand, within HP15_1351 at 1420.030 kb on - strand, within HP15_1351 at 1420.089 kb on + strand, within HP15_1351 at 1420.122 kb on + strand, within HP15_1351 at 1420.143 kb on + strand, within HP15_1351 at 1420.232 kb on - strand, within HP15_1351 at 1420.292 kb on - strand at 1420.375 kb on + strand at 1420.397 kb on + strand at 1420.476 kb on - strand at 1420.544 kb on + strand at 1420.566 kb on + strand at 1420.632 kb on - strand at 1420.674 kb on + strand at 1420.717 kb on - strand, within HP15_1352 at 1421.127 kb on + strand, within HP15_1352 at 1421.168 kb on + strand, within HP15_1352 at 1421.320 kb on + strand, within HP15_1352 at 1421.346 kb on - strand, within HP15_1352
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline as (N) remove 1,418,340 + +0.9 1,418,789 + HP15_1350 0.50 +0.1 1,418,797 - HP15_1350 0.50 +2.2 1,418,924 - HP15_1350 0.64 +0.6 1,419,008 + HP15_1350 0.73 +1.0 1,419,108 + HP15_1350 0.84 +1.8 1,419,116 - HP15_1350 0.85 +1.7 1,419,249 + +0.1 1,419,259 + +1.6 1,419,299 - +0.6 1,419,378 - HP15_1351 0.11 +0.0 1,419,539 + HP15_1351 0.25 -0.7 1,419,701 - HP15_1351 0.39 -0.8 1,419,771 - HP15_1351 0.45 +1.9 1,419,771 - HP15_1351 0.45 -0.1 1,419,779 + HP15_1351 0.46 -1.0 1,419,836 - HP15_1351 0.51 +0.1 1,419,859 + HP15_1351 0.53 -1.7 1,419,942 - HP15_1351 0.60 -0.7 1,420,030 - HP15_1351 0.68 -0.2 1,420,089 + HP15_1351 0.73 +1.4 1,420,122 + HP15_1351 0.76 +0.3 1,420,143 + HP15_1351 0.78 -1.0 1,420,232 - HP15_1351 0.86 -1.1 1,420,292 - +0.2 1,420,375 + -0.2 1,420,397 + +1.0 1,420,476 - -1.0 1,420,544 + +0.9 1,420,566 + -1.0 1,420,632 - +0.3 1,420,674 + +1.8 1,420,717 - HP15_1352 0.12 +0.9 1,421,127 + HP15_1352 0.29 +1.0 1,421,168 + HP15_1352 0.30 +2.1 1,421,320 + HP15_1352 0.37 -0.7 1,421,346 - HP15_1352 0.38 -1.3
Or see this region's nucleotide sequence