Strain Fitness in Marinobacter adhaerens HP15 around HP15_1347

Experiment: L-Citrulline as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1345 and HP15_1346 are separated by 3 nucleotidesHP15_1346 and HP15_1347 are separated by 9 nucleotidesHP15_1347 and HP15_1348 are separated by 199 nucleotides HP15_1345: HP15_1345 - sulphate ABC transporter, permease protein CysT, at 1,413,113 to 1,413,985 _1345 HP15_1346: HP15_1346 - sulfate ABC transporter, inner membrane subunit CysW, at 1,413,989 to 1,414,819 _1346 HP15_1347: HP15_1347 - sulfate/thiosulfate transporter subunit, at 1,414,829 to 1,415,917 _1347 HP15_1348: HP15_1348 - major facilitator family transporter, at 1,416,117 to 1,417,361 _1348 Position (kb) 1414 1415 1416Strain fitness (log2 ratio) -2 -1 0 1 2at 1413.833 kb on - strand, within HP15_1345at 1413.985 kb on + strandat 1413.988 kb on - strandat 1413.988 kb on - strandat 1413.988 kb on - strandat 1413.993 kb on - strandat 1414.131 kb on - strand, within HP15_1346at 1414.201 kb on + strand, within HP15_1346at 1414.209 kb on - strand, within HP15_1346at 1414.209 kb on - strand, within HP15_1346at 1414.243 kb on - strand, within HP15_1346at 1414.325 kb on - strand, within HP15_1346at 1414.408 kb on - strand, within HP15_1346at 1414.596 kb on - strand, within HP15_1346at 1414.612 kb on + strand, within HP15_1346at 1414.630 kb on + strand, within HP15_1346at 1414.643 kb on - strand, within HP15_1346at 1414.700 kb on - strand, within HP15_1346at 1414.712 kb on + strand, within HP15_1346at 1414.712 kb on + strand, within HP15_1346at 1414.768 kb on + strandat 1414.870 kb on + strandat 1414.870 kb on + strandat 1414.878 kb on - strandat 1414.925 kb on + strandat 1414.959 kb on - strand, within HP15_1347at 1415.191 kb on + strand, within HP15_1347at 1415.221 kb on + strand, within HP15_1347at 1415.221 kb on + strand, within HP15_1347at 1415.229 kb on - strand, within HP15_1347at 1415.229 kb on - strand, within HP15_1347at 1415.236 kb on + strand, within HP15_1347at 1415.244 kb on - strand, within HP15_1347at 1415.244 kb on - strand, within HP15_1347at 1415.255 kb on - strand, within HP15_1347at 1415.259 kb on + strand, within HP15_1347at 1415.376 kb on + strand, within HP15_1347at 1415.419 kb on + strand, within HP15_1347at 1415.423 kb on - strand, within HP15_1347at 1415.497 kb on + strand, within HP15_1347at 1415.553 kb on - strand, within HP15_1347at 1415.553 kb on - strand, within HP15_1347at 1415.649 kb on - strand, within HP15_1347at 1415.654 kb on - strand, within HP15_1347at 1415.667 kb on + strand, within HP15_1347at 1415.685 kb on - strand, within HP15_1347at 1415.718 kb on + strand, within HP15_1347at 1415.733 kb on + strand, within HP15_1347at 1415.790 kb on - strand, within HP15_1347at 1416.298 kb on + strand, within HP15_1348at 1416.306 kb on - strand, within HP15_1348at 1416.338 kb on - strand, within HP15_1348at 1416.420 kb on - strand, within HP15_1348at 1416.425 kb on - strand, within HP15_1348at 1416.601 kb on + strand, within HP15_1348at 1416.698 kb on + strand, within HP15_1348at 1416.701 kb on - strand, within HP15_1348at 1416.703 kb on + strand, within HP15_1348at 1416.703 kb on + strand, within HP15_1348at 1416.703 kb on + strand, within HP15_1348at 1416.703 kb on + strand, within HP15_1348at 1416.711 kb on - strand, within HP15_1348at 1416.711 kb on - strand, within HP15_1348at 1416.711 kb on - strand, within HP15_1348at 1416.790 kb on + strand, within HP15_1348at 1416.795 kb on - strand, within HP15_1348at 1416.868 kb on - strand, within HP15_1348at 1416.892 kb on - strand, within HP15_1348

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline as (N)
remove
1,413,833 - HP15_1345 0.82 -1.0
1,413,985 + +1.1
1,413,988 - -1.6
1,413,988 - +1.1
1,413,988 - +1.4
1,413,993 - -0.7
1,414,131 - HP15_1346 0.17 -0.5
1,414,201 + HP15_1346 0.26 -1.3
1,414,209 - HP15_1346 0.26 -1.0
1,414,209 - HP15_1346 0.26 -0.8
1,414,243 - HP15_1346 0.31 -0.6
1,414,325 - HP15_1346 0.40 +1.7
1,414,408 - HP15_1346 0.50 -0.7
1,414,596 - HP15_1346 0.73 -0.3
1,414,612 + HP15_1346 0.75 +0.8
1,414,630 + HP15_1346 0.77 -1.6
1,414,643 - HP15_1346 0.79 +1.7
1,414,700 - HP15_1346 0.86 +0.1
1,414,712 + HP15_1346 0.87 -0.7
1,414,712 + HP15_1346 0.87 -1.1
1,414,768 + +0.1
1,414,870 + +0.6
1,414,870 + -0.8
1,414,878 - +0.1
1,414,925 + +0.3
1,414,959 - HP15_1347 0.12 -0.6
1,415,191 + HP15_1347 0.33 +1.4
1,415,221 + HP15_1347 0.36 -1.5
1,415,221 + HP15_1347 0.36 -0.1
1,415,229 - HP15_1347 0.37 -0.1
1,415,229 - HP15_1347 0.37 -0.8
1,415,236 + HP15_1347 0.37 -1.6
1,415,244 - HP15_1347 0.38 +1.0
1,415,244 - HP15_1347 0.38 -1.0
1,415,255 - HP15_1347 0.39 -0.1
1,415,259 + HP15_1347 0.39 -0.5
1,415,376 + HP15_1347 0.50 +0.7
1,415,419 + HP15_1347 0.54 -1.1
1,415,423 - HP15_1347 0.55 -1.3
1,415,497 + HP15_1347 0.61 +1.5
1,415,553 - HP15_1347 0.66 -0.3
1,415,553 - HP15_1347 0.66 +0.1
1,415,649 - HP15_1347 0.75 -0.9
1,415,654 - HP15_1347 0.76 +0.4
1,415,667 + HP15_1347 0.77 +1.0
1,415,685 - HP15_1347 0.79 -0.5
1,415,718 + HP15_1347 0.82 -0.8
1,415,733 + HP15_1347 0.83 -0.3
1,415,790 - HP15_1347 0.88 -0.4
1,416,298 + HP15_1348 0.15 -0.8
1,416,306 - HP15_1348 0.15 +1.8
1,416,338 - HP15_1348 0.18 -0.2
1,416,420 - HP15_1348 0.24 -0.1
1,416,425 - HP15_1348 0.25 +1.8
1,416,601 + HP15_1348 0.39 -0.2
1,416,698 + HP15_1348 0.47 -0.6
1,416,701 - HP15_1348 0.47 -0.4
1,416,703 + HP15_1348 0.47 +0.9
1,416,703 + HP15_1348 0.47 -0.2
1,416,703 + HP15_1348 0.47 -0.8
1,416,703 + HP15_1348 0.47 -1.8
1,416,711 - HP15_1348 0.48 -0.3
1,416,711 - HP15_1348 0.48 +1.5
1,416,711 - HP15_1348 0.48 -1.1
1,416,790 + HP15_1348 0.54 -0.4
1,416,795 - HP15_1348 0.54 +1.2
1,416,868 - HP15_1348 0.60 +0.3
1,416,892 - HP15_1348 0.62 +1.6

Or see this region's nucleotide sequence