Experiment: L-Citrulline as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1338 and HP15_1339 are separated by 517 nucleotides HP15_1339 and HP15_1340 are separated by 801 nucleotides
HP15_1338: HP15_1338 - conserved hypothetical protein, at 1,405,696 to 1,406,055
_1338
HP15_1339: HP15_1339 - cupin 2 conserved barrel domain protein, at 1,406,573 to 1,406,938
_1339
HP15_1340: HP15_1340 - GCN5-related N-acetyltransferase, at 1,407,740 to 1,408,276
_1340
Position (kb)
1406
1407 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1405.642 kb on + strand at 1405.684 kb on - strand at 1405.689 kb on - strand at 1405.713 kb on - strand at 1405.813 kb on - strand, within HP15_1338 at 1405.817 kb on + strand, within HP15_1338 at 1405.856 kb on + strand, within HP15_1338 at 1405.974 kb on - strand, within HP15_1338 at 1406.010 kb on - strand, within HP15_1338 at 1406.180 kb on + strand at 1406.180 kb on + strand at 1406.187 kb on - strand at 1406.195 kb on + strand at 1406.351 kb on - strand at 1406.351 kb on - strand at 1406.428 kb on + strand at 1406.621 kb on + strand, within HP15_1339 at 1406.665 kb on + strand, within HP15_1339 at 1406.807 kb on + strand, within HP15_1339 at 1406.807 kb on + strand, within HP15_1339 at 1406.815 kb on - strand, within HP15_1339 at 1406.815 kb on - strand, within HP15_1339 at 1406.815 kb on - strand, within HP15_1339 at 1406.855 kb on + strand, within HP15_1339 at 1406.880 kb on - strand, within HP15_1339 at 1407.038 kb on + strand at 1407.112 kb on - strand at 1407.252 kb on + strand at 1407.270 kb on + strand at 1407.291 kb on - strand at 1407.291 kb on - strand at 1407.291 kb on - strand at 1407.435 kb on + strand at 1407.440 kb on + strand at 1407.555 kb on + strand at 1407.605 kb on + strand at 1407.635 kb on - strand at 1407.643 kb on - strand at 1407.843 kb on + strand, within HP15_1340
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline as (N) remove 1,405,642 + +2.1 1,405,684 - +1.4 1,405,689 - -0.4 1,405,713 - +0.4 1,405,813 - HP15_1338 0.33 -0.4 1,405,817 + HP15_1338 0.34 -0.2 1,405,856 + HP15_1338 0.44 -1.5 1,405,974 - HP15_1338 0.77 -0.4 1,406,010 - HP15_1338 0.87 +1.7 1,406,180 + +1.2 1,406,180 + -0.3 1,406,187 - +1.9 1,406,195 + -0.4 1,406,351 - -0.7 1,406,351 - +1.0 1,406,428 + +1.1 1,406,621 + HP15_1339 0.13 -1.0 1,406,665 + HP15_1339 0.25 +2.5 1,406,807 + HP15_1339 0.64 -1.6 1,406,807 + HP15_1339 0.64 +1.9 1,406,815 - HP15_1339 0.66 +1.7 1,406,815 - HP15_1339 0.66 -1.1 1,406,815 - HP15_1339 0.66 +0.6 1,406,855 + HP15_1339 0.77 +0.6 1,406,880 - HP15_1339 0.84 -1.7 1,407,038 + -0.4 1,407,112 - +0.3 1,407,252 + -1.4 1,407,270 + -0.1 1,407,291 - +1.5 1,407,291 - -0.8 1,407,291 - +0.3 1,407,435 + +0.7 1,407,440 + -1.5 1,407,555 + -1.0 1,407,605 + -2.1 1,407,635 - +0.3 1,407,643 - -0.5 1,407,843 + HP15_1340 0.19 +2.0
Or see this region's nucleotide sequence