Experiment: L-Citrulline as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1141 and HP15_1142 are separated by 51 nucleotides HP15_1142 and HP15_1143 are separated by 24 nucleotides HP15_1143 and HP15_1144 are separated by 79 nucleotides
HP15_1141: HP15_1141 - enoyl-CoA hydratase/isomerase, at 1,175,030 to 1,175,803
_1141
HP15_1142: HP15_1142 - hypothetical protein, at 1,175,855 to 1,175,962
_1142
HP15_1143: HP15_1143 - hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit, at 1,175,987 to 1,177,501
_1143
HP15_1144: HP15_1144 - protein belonging to uncharacterized protein family UPF0061, at 1,177,581 to 1,179,035
_1144
Position (kb)
1175
1176
1177
1178 Strain fitness (log2 ratio)
-1
0
1
2 at 1175.120 kb on + strand, within HP15_1141 at 1175.248 kb on - strand, within HP15_1141 at 1175.265 kb on - strand, within HP15_1141 at 1175.287 kb on - strand, within HP15_1141 at 1175.304 kb on - strand, within HP15_1141 at 1175.319 kb on + strand, within HP15_1141 at 1175.333 kb on - strand, within HP15_1141 at 1175.555 kb on + strand, within HP15_1141 at 1175.622 kb on + strand, within HP15_1141 at 1175.663 kb on - strand, within HP15_1141 at 1175.711 kb on - strand, within HP15_1141 at 1175.788 kb on + strand at 1177.668 kb on - strand at 1177.897 kb on + strand, within HP15_1144 at 1177.900 kb on - strand, within HP15_1144 at 1177.906 kb on - strand, within HP15_1144 at 1177.996 kb on - strand, within HP15_1144 at 1178.002 kb on - strand, within HP15_1144 at 1178.110 kb on + strand, within HP15_1144 at 1178.110 kb on + strand, within HP15_1144 at 1178.115 kb on + strand, within HP15_1144 at 1178.123 kb on - strand, within HP15_1144 at 1178.289 kb on + strand, within HP15_1144 at 1178.400 kb on + strand, within HP15_1144 at 1178.410 kb on + strand, within HP15_1144 at 1178.413 kb on - strand, within HP15_1144 at 1178.413 kb on - strand, within HP15_1144 at 1178.413 kb on - strand, within HP15_1144
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline as (N) remove 1,175,120 + HP15_1141 0.12 +0.4 1,175,248 - HP15_1141 0.28 +0.8 1,175,265 - HP15_1141 0.30 -0.2 1,175,287 - HP15_1141 0.33 +1.7 1,175,304 - HP15_1141 0.35 +0.3 1,175,319 + HP15_1141 0.37 +0.2 1,175,333 - HP15_1141 0.39 +1.3 1,175,555 + HP15_1141 0.68 +1.5 1,175,622 + HP15_1141 0.76 +2.2 1,175,663 - HP15_1141 0.82 -0.6 1,175,711 - HP15_1141 0.88 +0.8 1,175,788 + +1.2 1,177,668 - +1.7 1,177,897 + HP15_1144 0.22 +1.5 1,177,900 - HP15_1144 0.22 +0.3 1,177,906 - HP15_1144 0.22 +1.2 1,177,996 - HP15_1144 0.29 -1.1 1,178,002 - HP15_1144 0.29 +0.9 1,178,110 + HP15_1144 0.36 +0.5 1,178,110 + HP15_1144 0.36 -0.4 1,178,115 + HP15_1144 0.37 +1.7 1,178,123 - HP15_1144 0.37 +0.0 1,178,289 + HP15_1144 0.49 -1.3 1,178,400 + HP15_1144 0.56 -0.7 1,178,410 + HP15_1144 0.57 +0.0 1,178,413 - HP15_1144 0.57 +0.1 1,178,413 - HP15_1144 0.57 +0.9 1,178,413 - HP15_1144 0.57 +0.9
Or see this region's nucleotide sequence