Strain Fitness in Marinobacter adhaerens HP15 around HP15_1103

Experiment: L-Citrulline as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1102 and HP15_1103 are separated by 844 nucleotidesHP15_1103 and HP15_1104 are separated by 320 nucleotides HP15_1102: HP15_1102 - integrase catalytic region, at 1,128,097 to 1,128,906 _1102 HP15_1103: HP15_1103 - protein containing Helix-turn-helix, AraC domain, at 1,129,751 to 1,130,716 _1103 HP15_1104: HP15_1104 - transposase, IS4 family protein-like protein, at 1,131,037 to 1,131,600 _1104 Position (kb) 1129 1130 1131Strain fitness (log2 ratio) -2 -1 0 1 2at 1128.798 kb on + strand, within HP15_1102at 1128.806 kb on - strand, within HP15_1102at 1128.806 kb on - strand, within HP15_1102at 1128.875 kb on + strandat 1128.875 kb on + strandat 1128.875 kb on + strandat 1128.883 kb on - strandat 1128.883 kb on - strandat 1128.883 kb on - strandat 1128.945 kb on - strandat 1129.029 kb on + strandat 1129.064 kb on - strandat 1129.069 kb on - strandat 1129.216 kb on + strandat 1129.244 kb on + strandat 1129.267 kb on + strandat 1129.275 kb on - strandat 1129.275 kb on - strandat 1129.340 kb on - strandat 1129.389 kb on - strandat 1129.391 kb on + strandat 1129.480 kb on + strandat 1129.490 kb on + strandat 1129.493 kb on + strandat 1129.498 kb on + strandat 1129.498 kb on + strandat 1129.500 kb on + strandat 1129.500 kb on + strandat 1129.534 kb on + strandat 1129.534 kb on + strandat 1129.534 kb on + strandat 1129.542 kb on - strandat 1129.542 kb on - strandat 1129.542 kb on - strandat 1129.601 kb on + strandat 1129.601 kb on + strandat 1129.601 kb on + strandat 1129.854 kb on - strand, within HP15_1103at 1129.864 kb on + strand, within HP15_1103at 1129.864 kb on + strand, within HP15_1103at 1130.340 kb on + strand, within HP15_1103at 1130.506 kb on + strand, within HP15_1103at 1130.651 kb on + strandat 1130.843 kb on + strandat 1130.853 kb on + strandat 1130.870 kb on + strandat 1130.986 kb on - strandat 1130.999 kb on + strandat 1131.035 kb on - strandat 1131.046 kb on + strandat 1131.054 kb on - strandat 1131.091 kb on - strandat 1131.091 kb on - strandat 1131.180 kb on + strand, within HP15_1104at 1131.298 kb on + strand, within HP15_1104at 1131.342 kb on - strand, within HP15_1104at 1131.346 kb on + strand, within HP15_1104at 1131.384 kb on + strand, within HP15_1104at 1131.427 kb on + strand, within HP15_1104at 1131.505 kb on - strand, within HP15_1104at 1131.630 kb on + strandat 1131.640 kb on + strandat 1131.682 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline as (N)
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1,128,798 + HP15_1102 0.87 +1.6
1,128,806 - HP15_1102 0.88 +1.8
1,128,806 - HP15_1102 0.88 +1.6
1,128,875 + +1.4
1,128,875 + +0.6
1,128,875 + -0.3
1,128,883 - +1.8
1,128,883 - +0.0
1,128,883 - -0.2
1,128,945 - -1.2
1,129,029 + -0.8
1,129,064 - +1.7
1,129,069 - +0.7
1,129,216 + -0.3
1,129,244 + -0.3
1,129,267 + -2.1
1,129,275 - -0.2
1,129,275 - +0.2
1,129,340 - +1.4
1,129,389 - -0.5
1,129,391 + +1.5
1,129,480 + -0.3
1,129,490 + +2.6
1,129,493 + +1.9
1,129,498 + +1.3
1,129,498 + -0.6
1,129,500 + -0.3
1,129,500 + +2.0
1,129,534 + -0.9
1,129,534 + -0.3
1,129,534 + +0.2
1,129,542 - -0.7
1,129,542 - +0.0
1,129,542 - -0.4
1,129,601 + -2.0
1,129,601 + -1.3
1,129,601 + +1.6
1,129,854 - HP15_1103 0.11 -0.2
1,129,864 + HP15_1103 0.12 +0.1
1,129,864 + HP15_1103 0.12 +1.6
1,130,340 + HP15_1103 0.61 -1.4
1,130,506 + HP15_1103 0.78 -0.3
1,130,651 + -0.8
1,130,843 + -0.1
1,130,853 + +0.2
1,130,870 + -1.4
1,130,986 - +0.4
1,130,999 + -0.0
1,131,035 - -0.2
1,131,046 + +0.3
1,131,054 - +0.9
1,131,091 - -0.1
1,131,091 - +2.6
1,131,180 + HP15_1104 0.25 +1.0
1,131,298 + HP15_1104 0.46 -0.1
1,131,342 - HP15_1104 0.54 +1.6
1,131,346 + HP15_1104 0.55 +1.5
1,131,384 + HP15_1104 0.62 -0.3
1,131,427 + HP15_1104 0.69 +1.1
1,131,505 - HP15_1104 0.83 +1.4
1,131,630 + +1.5
1,131,640 + +1.9
1,131,682 - +0.1

Or see this region's nucleotide sequence