Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt motB and Shewana3_2898 are separated by 3 nucleotides Shewana3_2898 and Shewana3_2899 are separated by 314 nucleotides Shewana3_2899 and Shewana3_2900 are separated by 2 nucleotides
Shewana3_2897: motB - flagellar motor protein MotB (RefSeq), at 3,466,819 to 3,467,739
motB
Shewana3_2898: Shewana3_2898 - flagellar motor protein PomA (RefSeq), at 3,467,743 to 3,468,510
_2898
Shewana3_2899: Shewana3_2899 - exodeoxyribonuclease VII small subunit (RefSeq), at 3,468,825 to 3,469,064
_2899
Shewana3_2900: Shewana3_2900 - farnesyl-diphosphate synthase (RefSeq), at 3,469,067 to 3,469,948
_2900
Position (kb)
3467
3468
3469 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5 at 3466.861 kb on - strand at 3466.900 kb on + strand at 3466.931 kb on - strand, within motB at 3467.033 kb on - strand, within motB at 3467.054 kb on + strand, within motB at 3467.149 kb on - strand, within motB at 3467.149 kb on - strand, within motB at 3467.297 kb on + strand, within motB at 3467.546 kb on - strand, within motB at 3467.615 kb on - strand, within motB at 3467.662 kb on + strand at 3467.838 kb on - strand, within Shewana3_2898 at 3467.952 kb on - strand, within Shewana3_2898 at 3468.037 kb on + strand, within Shewana3_2898 at 3468.156 kb on - strand, within Shewana3_2898 at 3468.286 kb on + strand, within Shewana3_2898 at 3468.455 kb on + strand at 3468.463 kb on - strand at 3468.783 kb on + strand at 3468.786 kb on + strand at 3469.055 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 3,466,861 - +0.3 3,466,900 + +1.4 3,466,931 - motB Shewana3_2897 0.12 +1.9 3,467,033 - motB Shewana3_2897 0.23 +0.6 3,467,054 + motB Shewana3_2897 0.26 +2.0 3,467,149 - motB Shewana3_2897 0.36 +1.9 3,467,149 - motB Shewana3_2897 0.36 +1.7 3,467,297 + motB Shewana3_2897 0.52 +1.9 3,467,546 - motB Shewana3_2897 0.79 +0.9 3,467,615 - motB Shewana3_2897 0.86 +1.1 3,467,662 + +2.4 3,467,838 - Shewana3_2898 0.12 +1.8 3,467,952 - Shewana3_2898 0.27 +2.5 3,468,037 + Shewana3_2898 0.38 +1.7 3,468,156 - Shewana3_2898 0.54 +1.6 3,468,286 + Shewana3_2898 0.71 +1.4 3,468,455 + +4.8 3,468,463 - +2.1 3,468,783 + +0.4 3,468,786 + +0.4 3,469,055 + +1.2
Or see this region's nucleotide sequence