Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2652 and Shewana3_2653 are separated by 3 nucleotides Shewana3_2653 and Shewana3_2654 overlap by 20 nucleotides Shewana3_2654 and Shewana3_2655 are separated by 105 nucleotides
Shewana3_2652: Shewana3_2652 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,165,894 to 3,166,784
_2652
Shewana3_2653: Shewana3_2653 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 3,166,788 to 3,167,795
_2653
Shewana3_2654: Shewana3_2654 - ABC transporter related (RefSeq), at 3,167,776 to 3,168,561
_2654
Shewana3_2655: Shewana3_2655 - trans-2-enoyl-CoA reductase (RefSeq), at 3,168,667 to 3,169,869
_2655
Position (kb) 3167
3168
3169 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 3167.790 kb on + strand at 3167.956 kb on - strand, within Shewana3_2654 at 3167.960 kb on + strand, within Shewana3_2654 at 3168.080 kb on + strand, within Shewana3_2654 at 3168.123 kb on + strand, within Shewana3_2654 at 3168.123 kb on + strand, within Shewana3_2654 at 3168.341 kb on + strand, within Shewana3_2654 at 3168.341 kb on + strand, within Shewana3_2654
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 3,167,790 + +2.4 3,167,956 - Shewana3_2654 0.23 -0.4 3,167,960 + Shewana3_2654 0.23 +2.6 3,168,080 + Shewana3_2654 0.39 +2.7 3,168,123 + Shewana3_2654 0.44 +1.3 3,168,123 + Shewana3_2654 0.44 +3.9 3,168,341 + Shewana3_2654 0.72 +3.3 3,168,341 + Shewana3_2654 0.72 +1.1
Or see this region's nucleotide sequence