Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2292

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2290 and Shewana3_2291 are separated by 127 nucleotidesShewana3_2291 and Shewana3_2292 are separated by 596 nucleotidesShewana3_2292 and Shewana3_2293 are separated by 81 nucleotides Shewana3_2290: Shewana3_2290 - hypothetical protein (RefSeq), at 2,754,407 to 2,755,432 _2290 Shewana3_2291: Shewana3_2291 - acylphosphatase (RefSeq), at 2,755,560 to 2,755,832 _2291 Shewana3_2292: Shewana3_2292 - hypothetical protein (RefSeq), at 2,756,429 to 2,756,968 _2292 Shewana3_2293: Shewana3_2293 - beta-hexosaminidase (RefSeq), at 2,757,050 to 2,758,078 _2293 Position (kb) 2756 2757Strain fitness (log2 ratio) -2 -1 0 1at 2755.613 kb on + strand, within Shewana3_2291at 2755.641 kb on - strand, within Shewana3_2291at 2756.335 kb on + strandat 2756.581 kb on - strand, within Shewana3_2292at 2756.713 kb on - strand, within Shewana3_2292at 2756.748 kb on + strand, within Shewana3_2292at 2756.756 kb on - strand, within Shewana3_2292at 2756.841 kb on + strand, within Shewana3_2292at 2756.862 kb on + strand, within Shewana3_2292at 2757.007 kb on + strandat 2757.364 kb on - strand, within Shewana3_2293at 2757.428 kb on - strand, within Shewana3_2293at 2757.577 kb on - strand, within Shewana3_2293at 2757.625 kb on + strand, within Shewana3_2293at 2757.702 kb on - strand, within Shewana3_2293at 2757.728 kb on + strand, within Shewana3_2293at 2757.890 kb on + strand, within Shewana3_2293

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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2,755,613 + Shewana3_2291 0.19 -1.7
2,755,641 - Shewana3_2291 0.30 -0.4
2,756,335 + -1.8
2,756,581 - Shewana3_2292 0.28 -0.7
2,756,713 - Shewana3_2292 0.53 +0.6
2,756,748 + Shewana3_2292 0.59 +0.3
2,756,756 - Shewana3_2292 0.61 +1.0
2,756,841 + Shewana3_2292 0.76 +1.2
2,756,862 + Shewana3_2292 0.80 +0.4
2,757,007 + -0.4
2,757,364 - Shewana3_2293 0.31 -0.8
2,757,428 - Shewana3_2293 0.37 -0.4
2,757,577 - Shewana3_2293 0.51 -0.1
2,757,625 + Shewana3_2293 0.56 -1.1
2,757,702 - Shewana3_2293 0.63 -0.2
2,757,728 + Shewana3_2293 0.66 +1.2
2,757,890 + Shewana3_2293 0.82 -0.7

Or see this region's nucleotide sequence