Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1662 and Shewana3_1663 are separated by 225 nucleotides Shewana3_1663 and Shewana3_1664 are separated by 35 nucleotides Shewana3_1664 and Shewana3_1665 are separated by 107 nucleotides
Shewana3_1662: Shewana3_1662 - hypothetical protein (RefSeq), at 1,954,074 to 1,954,829
_1662
Shewana3_1663: Shewana3_1663 - hypothetical protein (RefSeq), at 1,955,055 to 1,955,366
_1663
Shewana3_1664: Shewana3_1664 - ThiJ/PfpI domain-containing protein (RefSeq), at 1,955,402 to 1,956,004
_1664
Shewana3_1665: Shewana3_1665 - hypothetical protein (RefSeq), at 1,956,112 to 1,957,143
_1665
Position (kb) 1955
1956
1957 Strain fitness (log2 ratio) -1
0
1
2
3 at 1954.552 kb on + strand, within Shewana3_1662 at 1954.794 kb on + strand at 1954.990 kb on + strand at 1955.207 kb on - strand, within Shewana3_1663 at 1955.869 kb on + strand, within Shewana3_1664 at 1956.027 kb on + strand at 1956.319 kb on - strand, within Shewana3_1665 at 1956.342 kb on - strand, within Shewana3_1665 at 1956.342 kb on - strand, within Shewana3_1665
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 1,954,552 + Shewana3_1662 0.63 +0.9 1,954,794 + -0.0 1,954,990 + -0.8 1,955,207 - Shewana3_1663 0.49 +3.1 1,955,869 + Shewana3_1664 0.77 +0.9 1,956,027 + +0.6 1,956,319 - Shewana3_1665 0.20 -1.3 1,956,342 - Shewana3_1665 0.22 -0.2 1,956,342 - Shewana3_1665 0.22 +0.3
Or see this region's nucleotide sequence