Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fliF and fliG overlap by 8 nucleotides fliG and fliH overlap by 14 nucleotides fliH and fliI overlap by 32 nucleotides
Shewana3_1342: fliF - flagellar MS-ring protein (RefSeq), at 1,554,916 to 1,556,601
fliF
Shewana3_1343: fliG - flagellar motor switch protein G (RefSeq), at 1,556,594 to 1,557,640
fliG
Shewana3_1344: fliH - flagellar assembly protein H (RefSeq), at 1,557,627 to 1,558,589
fliH
Shewana3_1345: fliI - flagellum-specific ATP synthase (RefSeq), at 1,558,558 to 1,559,895
fliI
Position (kb) 1556
1557
1558 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 1555.703 kb on + strand, within fliF at 1556.032 kb on - strand, within fliF at 1556.104 kb on + strand, within fliF at 1556.182 kb on - strand, within fliF at 1556.247 kb on + strand, within fliF at 1556.264 kb on + strand, within fliF at 1556.307 kb on - strand, within fliF at 1556.362 kb on - strand, within fliF at 1556.426 kb on + strand, within fliF at 1556.426 kb on + strand, within fliF at 1556.434 kb on - strand at 1556.455 kb on + strand at 1556.463 kb on - strand at 1556.463 kb on - strand at 1556.517 kb on + strand at 1556.592 kb on - strand at 1556.695 kb on - strand at 1556.947 kb on + strand, within fliG at 1557.112 kb on - strand, within fliG at 1557.127 kb on + strand, within fliG at 1557.128 kb on - strand, within fliG at 1557.225 kb on + strand, within fliG at 1557.238 kb on + strand, within fliG at 1557.637 kb on - strand at 1557.816 kb on - strand, within fliH at 1557.914 kb on + strand, within fliH at 1557.917 kb on - strand, within fliH at 1557.922 kb on - strand, within fliH at 1557.928 kb on + strand, within fliH at 1557.928 kb on + strand, within fliH at 1557.928 kb on + strand, within fliH at 1557.975 kb on + strand, within fliH at 1557.984 kb on - strand, within fliH at 1558.029 kb on + strand, within fliH at 1558.097 kb on + strand, within fliH at 1558.107 kb on - strand, within fliH at 1558.126 kb on + strand, within fliH at 1558.133 kb on + strand, within fliH at 1558.183 kb on + strand, within fliH at 1558.357 kb on + strand, within fliH at 1558.357 kb on + strand, within fliH at 1558.365 kb on - strand, within fliH
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 1,555,703 + fliF Shewana3_1342 0.47 +0.9 1,556,032 - fliF Shewana3_1342 0.66 +2.6 1,556,104 + fliF Shewana3_1342 0.70 +1.6 1,556,182 - fliF Shewana3_1342 0.75 +2.2 1,556,247 + fliF Shewana3_1342 0.79 +2.2 1,556,264 + fliF Shewana3_1342 0.80 +1.7 1,556,307 - fliF Shewana3_1342 0.83 +2.1 1,556,362 - fliF Shewana3_1342 0.86 +3.1 1,556,426 + fliF Shewana3_1342 0.90 +1.9 1,556,426 + fliF Shewana3_1342 0.90 +1.5 1,556,434 - +2.4 1,556,455 + +1.5 1,556,463 - +1.1 1,556,463 - +2.3 1,556,517 + +1.6 1,556,592 - +1.8 1,556,695 - +2.0 1,556,947 + fliG Shewana3_1343 0.34 +2.0 1,557,112 - fliG Shewana3_1343 0.49 +0.8 1,557,127 + fliG Shewana3_1343 0.51 +2.0 1,557,128 - fliG Shewana3_1343 0.51 +1.4 1,557,225 + fliG Shewana3_1343 0.60 +0.9 1,557,238 + fliG Shewana3_1343 0.62 +2.3 1,557,637 - +1.9 1,557,816 - fliH Shewana3_1344 0.20 +0.8 1,557,914 + fliH Shewana3_1344 0.30 +3.8 1,557,917 - fliH Shewana3_1344 0.30 +1.2 1,557,922 - fliH Shewana3_1344 0.31 +2.0 1,557,928 + fliH Shewana3_1344 0.31 +2.2 1,557,928 + fliH Shewana3_1344 0.31 +2.4 1,557,928 + fliH Shewana3_1344 0.31 +1.3 1,557,975 + fliH Shewana3_1344 0.36 +1.7 1,557,984 - fliH Shewana3_1344 0.37 +2.1 1,558,029 + fliH Shewana3_1344 0.42 +1.2 1,558,097 + fliH Shewana3_1344 0.49 +1.7 1,558,107 - fliH Shewana3_1344 0.50 +1.5 1,558,126 + fliH Shewana3_1344 0.52 +1.3 1,558,133 + fliH Shewana3_1344 0.53 +0.4 1,558,183 + fliH Shewana3_1344 0.58 +2.7 1,558,357 + fliH Shewana3_1344 0.76 +1.4 1,558,357 + fliH Shewana3_1344 0.76 +1.9 1,558,365 - fliH Shewana3_1344 0.77 +2.3
Or see this region's nucleotide sequence