Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0837 and Shewana3_0838 are separated by 236 nucleotides Shewana3_0838 and Shewana3_0839 are separated by 49 nucleotides
Shewana3_0837: Shewana3_0837 - NAD-dependent epimerase/dehydratase (RefSeq), at 969,774 to 970,709
_0837
Shewana3_0838: Shewana3_0838 - MerR family transcriptional regulator (RefSeq), at 970,946 to 971,383
_0838
Shewana3_0839: Shewana3_0839 - AFG1 family ATPase (RefSeq), at 971,433 to 972,635
_0839
Position (kb) 970
971
972 Strain fitness (log2 ratio) -1
0
1
2 at 969.968 kb on + strand, within Shewana3_0837 at 970.026 kb on + strand, within Shewana3_0837 at 970.098 kb on - strand, within Shewana3_0837 at 970.231 kb on - strand, within Shewana3_0837 at 970.276 kb on + strand, within Shewana3_0837 at 970.386 kb on + strand, within Shewana3_0837 at 970.474 kb on + strand, within Shewana3_0837 at 970.535 kb on - strand, within Shewana3_0837 at 970.545 kb on + strand, within Shewana3_0837 at 970.622 kb on + strand at 970.659 kb on + strand at 970.730 kb on - strand at 970.761 kb on + strand at 970.761 kb on + strand at 970.769 kb on - strand at 971.309 kb on - strand, within Shewana3_0838 at 971.571 kb on - strand, within Shewana3_0839 at 971.617 kb on + strand, within Shewana3_0839 at 971.655 kb on + strand, within Shewana3_0839 at 971.663 kb on - strand, within Shewana3_0839 at 971.838 kb on + strand, within Shewana3_0839 at 971.846 kb on - strand, within Shewana3_0839 at 971.863 kb on + strand, within Shewana3_0839 at 971.971 kb on - strand, within Shewana3_0839 at 972.070 kb on + strand, within Shewana3_0839 at 972.070 kb on + strand, within Shewana3_0839 at 972.078 kb on - strand, within Shewana3_0839 at 972.078 kb on - strand, within Shewana3_0839 at 972.295 kb on + strand, within Shewana3_0839 at 972.318 kb on + strand, within Shewana3_0839
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 969,968 + Shewana3_0837 0.21 -0.5 970,026 + Shewana3_0837 0.27 -0.1 970,098 - Shewana3_0837 0.35 -0.6 970,231 - Shewana3_0837 0.49 +0.8 970,276 + Shewana3_0837 0.54 -0.0 970,386 + Shewana3_0837 0.65 +1.9 970,474 + Shewana3_0837 0.75 +0.1 970,535 - Shewana3_0837 0.81 -0.6 970,545 + Shewana3_0837 0.82 -1.3 970,622 + -0.6 970,659 + +0.1 970,730 - -0.2 970,761 + +0.3 970,761 + +1.4 970,769 - +0.5 971,309 - Shewana3_0838 0.83 +0.8 971,571 - Shewana3_0839 0.11 -0.2 971,617 + Shewana3_0839 0.15 +0.3 971,655 + Shewana3_0839 0.18 -0.1 971,663 - Shewana3_0839 0.19 -0.7 971,838 + Shewana3_0839 0.34 +0.2 971,846 - Shewana3_0839 0.34 -0.2 971,863 + Shewana3_0839 0.36 +0.3 971,971 - Shewana3_0839 0.45 -0.4 972,070 + Shewana3_0839 0.53 -0.1 972,070 + Shewana3_0839 0.53 +0.6 972,078 - Shewana3_0839 0.54 -0.4 972,078 - Shewana3_0839 0.54 +0.6 972,295 + Shewana3_0839 0.72 +0.0 972,318 + Shewana3_0839 0.74 -0.2
Or see this region's nucleotide sequence