Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0778 and Shewana3_0779 overlap by 4 nucleotides Shewana3_0779 and Shewana3_0780 are separated by 295 nucleotides
Shewana3_0778: Shewana3_0778 - ammonium transporter (RefSeq), at 900,554 to 901,954
_0778
Shewana3_0779: Shewana3_0779 - nitrogen regulatory protein P-II (RefSeq), at 901,951 to 902,289
_0779
Shewana3_0780: Shewana3_0780 - 2-dehydropantoate 2-reductase (RefSeq), at 902,585 to 903,568
_0780
Position (kb) 901
902
903 Strain fitness (log2 ratio) -1
0
1 at 900.954 kb on + strand, within Shewana3_0778 at 900.986 kb on - strand, within Shewana3_0778 at 900.993 kb on - strand, within Shewana3_0778 at 901.228 kb on - strand, within Shewana3_0778 at 901.291 kb on + strand, within Shewana3_0778 at 901.294 kb on - strand, within Shewana3_0778 at 901.495 kb on - strand, within Shewana3_0778 at 901.613 kb on + strand, within Shewana3_0778 at 901.613 kb on + strand, within Shewana3_0778 at 901.618 kb on + strand, within Shewana3_0778 at 901.618 kb on + strand, within Shewana3_0778 at 901.700 kb on - strand, within Shewana3_0778 at 901.715 kb on - strand, within Shewana3_0778 at 901.798 kb on - strand, within Shewana3_0778 at 902.155 kb on - strand, within Shewana3_0779 at 902.186 kb on - strand, within Shewana3_0779 at 902.712 kb on + strand, within Shewana3_0780 at 902.730 kb on - strand, within Shewana3_0780 at 902.788 kb on + strand, within Shewana3_0780 at 902.912 kb on - strand, within Shewana3_0780 at 902.970 kb on - strand, within Shewana3_0780 at 902.991 kb on + strand, within Shewana3_0780 at 902.993 kb on + strand, within Shewana3_0780 at 903.003 kb on + strand, within Shewana3_0780 at 903.003 kb on + strand, within Shewana3_0780 at 903.011 kb on - strand, within Shewana3_0780 at 903.011 kb on - strand, within Shewana3_0780 at 903.011 kb on - strand, within Shewana3_0780 at 903.079 kb on - strand, within Shewana3_0780 at 903.144 kb on - strand, within Shewana3_0780 at 903.184 kb on - strand, within Shewana3_0780
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 900,954 + Shewana3_0778 0.29 +1.0 900,986 - Shewana3_0778 0.31 +1.3 900,993 - Shewana3_0778 0.31 +0.1 901,228 - Shewana3_0778 0.48 +1.4 901,291 + Shewana3_0778 0.53 -0.1 901,294 - Shewana3_0778 0.53 +1.2 901,495 - Shewana3_0778 0.67 +1.0 901,613 + Shewana3_0778 0.76 +1.2 901,613 + Shewana3_0778 0.76 +0.7 901,618 + Shewana3_0778 0.76 +1.4 901,618 + Shewana3_0778 0.76 +0.2 901,700 - Shewana3_0778 0.82 +1.0 901,715 - Shewana3_0778 0.83 +1.0 901,798 - Shewana3_0778 0.89 +1.4 902,155 - Shewana3_0779 0.60 +1.2 902,186 - Shewana3_0779 0.69 +1.2 902,712 + Shewana3_0780 0.13 -0.3 902,730 - Shewana3_0780 0.15 -0.1 902,788 + Shewana3_0780 0.21 -0.8 902,912 - Shewana3_0780 0.33 -0.5 902,970 - Shewana3_0780 0.39 -0.2 902,991 + Shewana3_0780 0.41 +0.0 902,993 + Shewana3_0780 0.41 +0.2 903,003 + Shewana3_0780 0.42 +0.0 903,003 + Shewana3_0780 0.42 +1.4 903,011 - Shewana3_0780 0.43 -0.8 903,011 - Shewana3_0780 0.43 -0.2 903,011 - Shewana3_0780 0.43 -1.1 903,079 - Shewana3_0780 0.50 +1.1 903,144 - Shewana3_0780 0.57 +0.3 903,184 - Shewana3_0780 0.61 -0.1
Or see this region's nucleotide sequence