Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0684 and Shewana3_0685 are separated by 99 nucleotides Shewana3_0685 and Shewana3_0686 are separated by 80 nucleotides Shewana3_0686 and Shewana3_0687 overlap by 4 nucleotides Shewana3_0687 and Shewana3_0688 are separated by 33 nucleotides
Shewana3_0684: Shewana3_0684 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (RefSeq), at 800,823 to 802,082
_0684
Shewana3_0685: Shewana3_0685 - TetR family transcriptional regulator (RefSeq), at 802,182 to 802,760
_0685
Shewana3_0686: Shewana3_0686 - hypothetical protein (RefSeq), at 802,841 to 803,701
_0686
Shewana3_0687: Shewana3_0687 - hypothetical protein (RefSeq), at 803,698 to 804,102
_0687
Shewana3_0688: Shewana3_0688 - hypothetical protein (RefSeq), at 804,136 to 804,576
_0688
Position (kb) 802
803
804 Strain fitness (log2 ratio) -1
0
1
2 at 802.234 kb on + strand at 802.235 kb on + strand at 802.260 kb on + strand, within Shewana3_0685 at 802.260 kb on + strand, within Shewana3_0685 at 802.268 kb on - strand, within Shewana3_0685 at 802.268 kb on - strand, within Shewana3_0685 at 802.268 kb on - strand, within Shewana3_0685 at 802.313 kb on - strand, within Shewana3_0685 at 802.416 kb on - strand, within Shewana3_0685 at 802.682 kb on + strand, within Shewana3_0685 at 802.921 kb on - strand at 803.013 kb on + strand, within Shewana3_0686 at 803.038 kb on + strand, within Shewana3_0686 at 803.249 kb on + strand, within Shewana3_0686 at 803.465 kb on + strand, within Shewana3_0686 at 803.472 kb on + strand, within Shewana3_0686 at 803.511 kb on - strand, within Shewana3_0686 at 803.553 kb on - strand, within Shewana3_0686 at 803.602 kb on + strand, within Shewana3_0686 at 803.639 kb on + strand at 803.655 kb on + strand at 803.705 kb on + strand at 803.727 kb on + strand at 803.871 kb on - strand, within Shewana3_0687 at 803.907 kb on + strand, within Shewana3_0687 at 803.957 kb on + strand, within Shewana3_0687 at 803.965 kb on - strand, within Shewana3_0687 at 804.105 kb on - strand at 804.178 kb on + strand at 804.325 kb on - strand, within Shewana3_0688 at 804.358 kb on + strand, within Shewana3_0688 at 804.366 kb on - strand, within Shewana3_0688 at 804.505 kb on + strand, within Shewana3_0688 at 804.694 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 802,234 + -0.5 802,235 + -0.8 802,260 + Shewana3_0685 0.13 +0.3 802,260 + Shewana3_0685 0.13 +0.1 802,268 - Shewana3_0685 0.15 -0.5 802,268 - Shewana3_0685 0.15 +0.2 802,268 - Shewana3_0685 0.15 -0.0 802,313 - Shewana3_0685 0.23 -0.6 802,416 - Shewana3_0685 0.40 +0.4 802,682 + Shewana3_0685 0.86 +0.2 802,921 - -0.1 803,013 + Shewana3_0686 0.20 -1.1 803,038 + Shewana3_0686 0.23 -0.0 803,249 + Shewana3_0686 0.47 -0.7 803,465 + Shewana3_0686 0.72 -1.1 803,472 + Shewana3_0686 0.73 +0.5 803,511 - Shewana3_0686 0.78 +1.1 803,553 - Shewana3_0686 0.83 -1.2 803,602 + Shewana3_0686 0.88 -0.1 803,639 + -0.3 803,655 + +0.1 803,705 + +2.4 803,727 + +1.8 803,871 - Shewana3_0687 0.43 +0.4 803,907 + Shewana3_0687 0.52 +0.5 803,957 + Shewana3_0687 0.64 +0.1 803,965 - Shewana3_0687 0.66 +0.5 804,105 - -0.0 804,178 + +1.3 804,325 - Shewana3_0688 0.43 -0.2 804,358 + Shewana3_0688 0.50 +0.5 804,366 - Shewana3_0688 0.52 +0.9 804,505 + Shewana3_0688 0.84 +0.2 804,694 + -0.1
Or see this region's nucleotide sequence