Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0486 and Shewana3_0487 are separated by 49 nucleotides Shewana3_0487 and Shewana3_0488 overlap by 4 nucleotides Shewana3_0488 and Shewana3_0489 are separated by 515 nucleotides
Shewana3_0486: Shewana3_0486 - redoxin domain-containing protein (RefSeq), at 568,287 to 568,871
_0486
Shewana3_0487: Shewana3_0487 - cytochrome C biogenesis protein (RefSeq), at 568,921 to 569,340
_0487
Shewana3_0488: Shewana3_0488 - cytochrome c-type biogenesis protein CcmF (RefSeq), at 569,337 to 571,376
_0488
Shewana3_0489: Shewana3_0489 - cytochrome c, putative (RefSeq), at 571,892 to 574,021
_0489
Position (kb) 569
570
571
572 Strain fitness (log2 ratio) -1
0
1
2
3 at 568.423 kb on + strand, within Shewana3_0486 at 568.431 kb on - strand, within Shewana3_0486 at 568.480 kb on - strand, within Shewana3_0486 at 568.628 kb on + strand, within Shewana3_0486 at 568.658 kb on + strand, within Shewana3_0486 at 568.658 kb on + strand, within Shewana3_0486 at 568.666 kb on - strand, within Shewana3_0486 at 568.666 kb on - strand, within Shewana3_0486 at 568.666 kb on - strand, within Shewana3_0486 at 568.754 kb on + strand, within Shewana3_0486 at 568.803 kb on + strand, within Shewana3_0486 at 568.818 kb on + strand at 568.873 kb on + strand at 568.911 kb on + strand at 568.918 kb on + strand at 568.950 kb on - strand at 569.164 kb on + strand, within Shewana3_0487 at 569.169 kb on + strand, within Shewana3_0487 at 569.172 kb on - strand, within Shewana3_0487 at 569.177 kb on - strand, within Shewana3_0487 at 569.406 kb on - strand at 569.530 kb on - strand at 569.627 kb on + strand, within Shewana3_0488 at 569.634 kb on - strand, within Shewana3_0488 at 569.639 kb on - strand, within Shewana3_0488 at 569.767 kb on - strand, within Shewana3_0488 at 569.767 kb on - strand, within Shewana3_0488 at 569.775 kb on + strand, within Shewana3_0488 at 569.893 kb on + strand, within Shewana3_0488 at 569.901 kb on - strand, within Shewana3_0488 at 569.936 kb on + strand, within Shewana3_0488 at 569.939 kb on + strand, within Shewana3_0488 at 569.944 kb on - strand, within Shewana3_0488 at 570.018 kb on + strand, within Shewana3_0488 at 570.018 kb on + strand, within Shewana3_0488 at 570.057 kb on + strand, within Shewana3_0488 at 570.059 kb on - strand, within Shewana3_0488 at 570.059 kb on - strand, within Shewana3_0488 at 570.059 kb on - strand, within Shewana3_0488 at 570.065 kb on - strand, within Shewana3_0488 at 570.138 kb on + strand, within Shewana3_0488 at 570.276 kb on - strand, within Shewana3_0488 at 570.284 kb on - strand, within Shewana3_0488 at 570.301 kb on + strand, within Shewana3_0488 at 570.356 kb on - strand, within Shewana3_0488 at 570.423 kb on + strand, within Shewana3_0488 at 570.431 kb on - strand, within Shewana3_0488 at 570.523 kb on - strand, within Shewana3_0488 at 570.530 kb on - strand, within Shewana3_0488 at 570.530 kb on - strand, within Shewana3_0488 at 570.530 kb on - strand, within Shewana3_0488 at 570.532 kb on + strand, within Shewana3_0488 at 570.550 kb on - strand, within Shewana3_0488 at 570.550 kb on - strand, within Shewana3_0488 at 570.550 kb on - strand, within Shewana3_0488 at 570.560 kb on + strand, within Shewana3_0488 at 570.560 kb on + strand, within Shewana3_0488 at 570.560 kb on + strand, within Shewana3_0488 at 570.726 kb on + strand, within Shewana3_0488 at 570.726 kb on + strand, within Shewana3_0488 at 570.731 kb on + strand, within Shewana3_0488 at 570.781 kb on - strand, within Shewana3_0488 at 570.781 kb on - strand, within Shewana3_0488 at 570.821 kb on + strand, within Shewana3_0488 at 570.821 kb on + strand, within Shewana3_0488 at 570.829 kb on - strand, within Shewana3_0488 at 570.899 kb on - strand, within Shewana3_0488 at 570.970 kb on + strand, within Shewana3_0488 at 570.975 kb on + strand, within Shewana3_0488 at 571.002 kb on + strand, within Shewana3_0488 at 571.002 kb on + strand, within Shewana3_0488 at 571.005 kb on - strand, within Shewana3_0488 at 571.010 kb on - strand, within Shewana3_0488 at 571.010 kb on - strand, within Shewana3_0488 at 571.088 kb on + strand, within Shewana3_0488 at 571.094 kb on - strand, within Shewana3_0488 at 571.096 kb on - strand, within Shewana3_0488 at 571.098 kb on + strand, within Shewana3_0488 at 571.098 kb on + strand, within Shewana3_0488 at 571.098 kb on + strand, within Shewana3_0488 at 571.106 kb on - strand, within Shewana3_0488 at 571.106 kb on - strand, within Shewana3_0488 at 571.106 kb on - strand, within Shewana3_0488 at 571.141 kb on + strand, within Shewana3_0488 at 571.148 kb on - strand, within Shewana3_0488 at 571.149 kb on + strand, within Shewana3_0488 at 571.154 kb on + strand, within Shewana3_0488 at 571.162 kb on - strand, within Shewana3_0488 at 571.165 kb on + strand, within Shewana3_0488 at 571.165 kb on + strand, within Shewana3_0488 at 571.173 kb on - strand at 571.188 kb on + strand at 571.200 kb on + strand at 571.200 kb on + strand at 571.200 kb on + strand at 571.200 kb on + strand at 571.200 kb on + strand at 571.208 kb on - strand at 571.208 kb on - strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.221 kb on + strand at 571.288 kb on - strand at 571.288 kb on - strand at 571.306 kb on + strand at 571.311 kb on + strand at 571.311 kb on + strand at 571.311 kb on + strand at 571.311 kb on + strand at 571.311 kb on + strand at 571.317 kb on + strand at 571.317 kb on + strand at 571.317 kb on + strand at 571.318 kb on + strand at 571.319 kb on - strand at 571.319 kb on - strand at 571.319 kb on - strand at 571.319 kb on - strand at 571.319 kb on - strand at 571.322 kb on + strand at 571.323 kb on - strand at 571.325 kb on - strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.335 kb on - strand at 571.335 kb on - strand at 571.335 kb on - strand at 571.335 kb on - strand at 571.335 kb on - strand at 571.335 kb on - strand at 571.335 kb on - strand at 571.335 kb on - strand at 571.335 kb on - strand at 571.383 kb on + strand at 571.383 kb on + strand at 571.390 kb on + strand at 571.391 kb on - strand at 571.423 kb on - strand at 571.496 kb on + strand at 571.504 kb on - strand at 571.523 kb on + strand at 571.523 kb on + strand at 571.531 kb on - strand at 571.531 kb on - strand at 571.531 kb on - strand at 571.531 kb on - strand at 571.534 kb on + strand at 571.537 kb on + strand at 571.541 kb on + strand at 571.541 kb on + strand at 571.565 kb on + strand at 571.571 kb on - strand at 571.662 kb on + strand at 571.785 kb on + strand at 571.821 kb on + strand at 571.836 kb on + strand at 571.839 kb on - strand at 571.841 kb on + strand at 571.841 kb on + strand at 571.841 kb on + strand at 571.841 kb on + strand at 571.841 kb on + strand at 571.841 kb on + strand at 571.841 kb on + strand at 571.841 kb on + strand at 571.842 kb on + strand at 571.843 kb on + strand at 571.843 kb on + strand at 571.843 kb on + strand at 571.843 kb on + strand at 571.843 kb on + strand at 571.843 kb on + strand at 571.849 kb on - strand at 571.849 kb on - strand at 571.849 kb on - strand at 571.849 kb on - strand at 571.849 kb on - strand at 571.851 kb on - strand at 571.851 kb on - strand at 571.851 kb on - strand at 571.877 kb on + strand at 571.877 kb on + strand at 571.885 kb on - strand at 571.885 kb on - strand at 571.909 kb on - strand at 571.925 kb on - strand at 571.941 kb on + strand at 571.946 kb on + strand at 571.946 kb on + strand at 571.953 kb on + strand at 571.953 kb on + strand at 571.953 kb on + strand at 571.953 kb on + strand at 571.953 kb on + strand at 571.954 kb on + strand at 571.954 kb on + strand at 571.954 kb on - strand at 571.954 kb on - strand at 571.954 kb on - strand at 571.959 kb on + strand at 571.962 kb on - strand at 571.962 kb on - strand at 571.962 kb on - strand at 571.962 kb on - strand at 571.962 kb on - strand at 571.964 kb on - strand at 571.976 kb on - strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.988 kb on + strand at 571.988 kb on + strand at 571.989 kb on + strand at 571.989 kb on + strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.996 kb on - strand at 571.997 kb on - strand at 571.997 kb on - strand at 572.006 kb on - strand at 572.011 kb on - strand at 572.031 kb on - strand at 572.091 kb on + strand at 572.100 kb on - strand at 572.108 kb on - strand, within Shewana3_0489 at 572.125 kb on - strand, within Shewana3_0489 at 572.188 kb on + strand, within Shewana3_0489 at 572.191 kb on - strand, within Shewana3_0489 at 572.201 kb on + strand, within Shewana3_0489 at 572.207 kb on + strand, within Shewana3_0489 at 572.215 kb on - strand, within Shewana3_0489 at 572.225 kb on - strand, within Shewana3_0489 at 572.240 kb on + strand, within Shewana3_0489 at 572.240 kb on + strand, within Shewana3_0489 at 572.246 kb on - strand, within Shewana3_0489 at 572.246 kb on - strand, within Shewana3_0489 at 572.247 kb on + strand, within Shewana3_0489 at 572.248 kb on - strand, within Shewana3_0489 at 572.255 kb on - strand, within Shewana3_0489 at 572.257 kb on + strand, within Shewana3_0489 at 572.257 kb on + strand, within Shewana3_0489 at 572.266 kb on + strand, within Shewana3_0489 at 572.266 kb on + strand, within Shewana3_0489 at 572.266 kb on + strand, within Shewana3_0489 at 572.266 kb on + strand, within Shewana3_0489 at 572.266 kb on - strand, within Shewana3_0489 at 572.268 kb on + strand, within Shewana3_0489 at 572.292 kb on + strand, within Shewana3_0489 at 572.295 kb on - strand, within Shewana3_0489 at 572.297 kb on + strand, within Shewana3_0489 at 572.300 kb on - strand, within Shewana3_0489 at 572.300 kb on - strand, within Shewana3_0489 at 572.302 kb on + strand, within Shewana3_0489 at 572.310 kb on + strand, within Shewana3_0489 at 572.310 kb on - strand, within Shewana3_0489 at 572.330 kb on + strand, within Shewana3_0489 at 572.331 kb on + strand, within Shewana3_0489 at 572.331 kb on + strand, within Shewana3_0489 at 572.331 kb on + strand, within Shewana3_0489
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 568,423 + Shewana3_0486 0.23 +1.0 568,431 - Shewana3_0486 0.25 -0.4 568,480 - Shewana3_0486 0.33 +2.0 568,628 + Shewana3_0486 0.58 -0.1 568,658 + Shewana3_0486 0.63 +0.2 568,658 + Shewana3_0486 0.63 +0.0 568,666 - Shewana3_0486 0.65 -0.1 568,666 - Shewana3_0486 0.65 -0.7 568,666 - Shewana3_0486 0.65 -0.1 568,754 + Shewana3_0486 0.80 -0.1 568,803 + Shewana3_0486 0.88 +0.3 568,818 + -1.5 568,873 + +0.1 568,911 + +0.2 568,918 + +0.5 568,950 - +0.2 569,164 + Shewana3_0487 0.58 -0.5 569,169 + Shewana3_0487 0.59 +0.0 569,172 - Shewana3_0487 0.60 -0.2 569,177 - Shewana3_0487 0.61 -0.5 569,406 - +0.7 569,530 - -0.5 569,627 + Shewana3_0488 0.14 +0.3 569,634 - Shewana3_0488 0.15 -0.7 569,639 - Shewana3_0488 0.15 -0.6 569,767 - Shewana3_0488 0.21 +0.8 569,767 - Shewana3_0488 0.21 +3.6 569,775 + Shewana3_0488 0.21 +0.5 569,893 + Shewana3_0488 0.27 -0.4 569,901 - Shewana3_0488 0.28 +0.3 569,936 + Shewana3_0488 0.29 -1.2 569,939 + Shewana3_0488 0.30 -0.4 569,944 - Shewana3_0488 0.30 -0.4 570,018 + Shewana3_0488 0.33 -0.4 570,018 + Shewana3_0488 0.33 +1.5 570,057 + Shewana3_0488 0.35 +0.4 570,059 - Shewana3_0488 0.35 -0.1 570,059 - Shewana3_0488 0.35 -1.1 570,059 - Shewana3_0488 0.35 -0.1 570,065 - Shewana3_0488 0.36 +0.0 570,138 + Shewana3_0488 0.39 +0.1 570,276 - Shewana3_0488 0.46 +0.2 570,284 - Shewana3_0488 0.46 -0.7 570,301 + Shewana3_0488 0.47 +0.7 570,356 - Shewana3_0488 0.50 -0.4 570,423 + Shewana3_0488 0.53 +0.4 570,431 - Shewana3_0488 0.54 +0.0 570,523 - Shewana3_0488 0.58 +0.2 570,530 - Shewana3_0488 0.58 -0.0 570,530 - Shewana3_0488 0.58 -0.6 570,530 - Shewana3_0488 0.58 -0.0 570,532 + Shewana3_0488 0.59 +0.5 570,550 - Shewana3_0488 0.59 +0.3 570,550 - Shewana3_0488 0.59 +0.0 570,550 - Shewana3_0488 0.59 +0.1 570,560 + Shewana3_0488 0.60 +0.3 570,560 + Shewana3_0488 0.60 -0.2 570,560 + Shewana3_0488 0.60 +0.0 570,726 + Shewana3_0488 0.68 +0.3 570,726 + Shewana3_0488 0.68 -0.2 570,731 + Shewana3_0488 0.68 -0.6 570,781 - Shewana3_0488 0.71 -1.0 570,781 - Shewana3_0488 0.71 +0.2 570,821 + Shewana3_0488 0.73 -0.2 570,821 + Shewana3_0488 0.73 -0.5 570,829 - Shewana3_0488 0.73 +0.5 570,899 - Shewana3_0488 0.77 +0.0 570,970 + Shewana3_0488 0.80 -1.5 570,975 + Shewana3_0488 0.80 +0.2 571,002 + Shewana3_0488 0.82 -1.1 571,002 + Shewana3_0488 0.82 -0.3 571,005 - Shewana3_0488 0.82 -0.0 571,010 - Shewana3_0488 0.82 -0.7 571,010 - Shewana3_0488 0.82 +0.1 571,088 + Shewana3_0488 0.86 +0.0 571,094 - Shewana3_0488 0.86 +0.5 571,096 - Shewana3_0488 0.86 -0.2 571,098 + Shewana3_0488 0.86 +0.7 571,098 + Shewana3_0488 0.86 -0.6 571,098 + Shewana3_0488 0.86 -0.0 571,106 - Shewana3_0488 0.87 -0.4 571,106 - Shewana3_0488 0.87 -0.6 571,106 - Shewana3_0488 0.87 -0.7 571,141 + Shewana3_0488 0.88 -0.7 571,148 - Shewana3_0488 0.89 -0.6 571,149 + Shewana3_0488 0.89 +0.4 571,154 + Shewana3_0488 0.89 +0.0 571,162 - Shewana3_0488 0.89 +0.1 571,165 + Shewana3_0488 0.90 -1.4 571,165 + Shewana3_0488 0.90 +0.5 571,173 - +0.7 571,188 + +1.3 571,200 + -0.6 571,200 + +0.5 571,200 + -0.6 571,200 + -0.7 571,200 + +0.2 571,208 - +0.5 571,208 - +0.3 571,215 + -0.4 571,215 + +0.5 571,215 + +0.3 571,221 + +0.5 571,288 - -0.0 571,288 - +0.5 571,306 + -0.5 571,311 + +0.7 571,311 + +0.1 571,311 + +0.3 571,311 + +0.9 571,311 + +1.1 571,317 + -0.4 571,317 + +0.5 571,317 + +0.7 571,318 + -0.3 571,319 - -1.6 571,319 - -0.4 571,319 - -0.3 571,319 - +0.4 571,319 - +0.6 571,322 + -0.1 571,323 - -0.6 571,325 - +0.2 571,327 + -0.0 571,327 + -0.4 571,327 + +1.2 571,327 + -0.5 571,335 - +0.1 571,335 - -0.4 571,335 - +0.8 571,335 - +0.0 571,335 - +0.2 571,335 - +0.1 571,335 - +0.1 571,335 - -0.5 571,335 - -0.4 571,383 + +1.1 571,383 + -0.6 571,390 + +0.2 571,391 - +0.3 571,423 - -0.6 571,496 + -0.3 571,504 - -1.7 571,523 + +0.7 571,523 + +1.0 571,531 - +0.3 571,531 - -0.2 571,531 - +0.1 571,531 - -0.4 571,534 + -0.1 571,537 + -0.6 571,541 + +0.2 571,541 + -0.1 571,565 + -0.7 571,571 - -0.7 571,662 + -0.4 571,785 + +0.6 571,821 + +0.4 571,836 + -0.3 571,839 - +0.8 571,841 + +0.3 571,841 + -0.1 571,841 + -0.3 571,841 + +0.4 571,841 + -0.5 571,841 + +0.2 571,841 + -0.0 571,841 + +0.5 571,842 + +0.0 571,843 + +0.2 571,843 + +0.6 571,843 + -0.2 571,843 + -0.5 571,843 + -0.3 571,843 + +0.2 571,849 - +0.3 571,849 - -0.6 571,849 - -0.4 571,849 - -1.5 571,849 - -0.9 571,851 - -0.7 571,851 - +2.3 571,851 - +1.0 571,877 + -0.3 571,877 + -0.0 571,885 - +0.8 571,885 - -0.4 571,909 - +0.9 571,925 - -0.2 571,941 + +0.6 571,946 + +0.0 571,946 + +0.2 571,953 + +0.3 571,953 + -0.8 571,953 + -0.9 571,953 + +0.4 571,953 + -1.2 571,954 + -0.5 571,954 + -0.3 571,954 - -0.9 571,954 - +3.2 571,954 - -0.6 571,959 + -0.0 571,962 - +0.1 571,962 - -0.9 571,962 - -0.0 571,962 - +0.7 571,962 - +1.1 571,964 - -0.6 571,976 - -0.5 571,987 + +0.1 571,987 + -1.0 571,987 + +0.2 571,987 + +0.2 571,987 + +0.1 571,987 + +1.6 571,987 + -1.0 571,987 + -1.3 571,987 + +0.3 571,987 + +0.0 571,987 + +0.1 571,987 + -0.5 571,987 + +0.6 571,987 + -0.2 571,987 + -0.0 571,988 + +1.0 571,988 + +0.3 571,989 + -0.6 571,989 + +0.4 571,995 - +0.1 571,995 - +0.2 571,995 - +0.1 571,995 - +0.3 571,995 - +0.5 571,995 - -0.2 571,995 - -0.3 571,995 - -0.0 571,995 - -0.0 571,995 - -0.4 571,995 - +0.1 571,995 - +0.2 571,995 - +0.4 571,995 - -0.3 571,995 - -0.4 571,995 - +0.1 571,996 - -0.3 571,997 - +0.5 571,997 - -0.1 572,006 - +0.4 572,011 - +0.3 572,031 - -0.1 572,091 + -0.2 572,100 - +0.3 572,108 - Shewana3_0489 0.10 +0.0 572,125 - Shewana3_0489 0.11 +0.5 572,188 + Shewana3_0489 0.14 +0.0 572,191 - Shewana3_0489 0.14 -0.2 572,201 + Shewana3_0489 0.15 +2.2 572,207 + Shewana3_0489 0.15 -1.2 572,215 - Shewana3_0489 0.15 -1.2 572,225 - Shewana3_0489 0.16 -0.2 572,240 + Shewana3_0489 0.16 +0.1 572,240 + Shewana3_0489 0.16 +0.4 572,246 - Shewana3_0489 0.17 +0.0 572,246 - Shewana3_0489 0.17 +0.4 572,247 + Shewana3_0489 0.17 -0.2 572,248 - Shewana3_0489 0.17 -0.6 572,255 - Shewana3_0489 0.17 -0.2 572,257 + Shewana3_0489 0.17 -0.1 572,257 + Shewana3_0489 0.17 -0.1 572,266 + Shewana3_0489 0.18 -0.5 572,266 + Shewana3_0489 0.18 +1.4 572,266 + Shewana3_0489 0.18 +0.1 572,266 + Shewana3_0489 0.18 -0.9 572,266 - Shewana3_0489 0.18 +0.5 572,268 + Shewana3_0489 0.18 +0.3 572,292 + Shewana3_0489 0.19 -1.0 572,295 - Shewana3_0489 0.19 -0.2 572,297 + Shewana3_0489 0.19 +0.2 572,300 - Shewana3_0489 0.19 +0.5 572,300 - Shewana3_0489 0.19 -0.2 572,302 + Shewana3_0489 0.19 -0.5 572,310 + Shewana3_0489 0.20 +0.9 572,310 - Shewana3_0489 0.20 +0.3 572,330 + Shewana3_0489 0.21 -0.7 572,331 + Shewana3_0489 0.21 +1.3 572,331 + Shewana3_0489 0.21 +0.5 572,331 + Shewana3_0489 0.21 -0.1
Or see this region's nucleotide sequence