Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0439 and Shewana3_0440 are separated by 180 nucleotides Shewana3_0440 and purH are separated by 105 nucleotides
Shewana3_0439: Shewana3_0439 - hypothetical protein (RefSeq), at 510,981 to 514,202
_0439
Shewana3_0440: Shewana3_0440 - phosphoribosylamine--glycine ligase (RefSeq), at 514,383 to 515,681
_0440
Shewana3_0441: purH - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (RefSeq), at 515,787 to 517,385
purH
Position (kb) 514
515
516 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 513.602 kb on + strand, within Shewana3_0439 at 513.737 kb on - strand, within Shewana3_0439 at 513.830 kb on + strand, within Shewana3_0439 at 513.838 kb on - strand, within Shewana3_0439 at 514.068 kb on - strand at 514.092 kb on + strand at 514.386 kb on + strand at 514.394 kb on - strand at 514.494 kb on - strand at 514.509 kb on + strand at 514.511 kb on - strand at 514.536 kb on + strand, within Shewana3_0440 at 514.552 kb on - strand, within Shewana3_0440 at 514.582 kb on + strand, within Shewana3_0440 at 514.613 kb on - strand, within Shewana3_0440 at 514.613 kb on - strand, within Shewana3_0440 at 514.713 kb on - strand, within Shewana3_0440 at 514.732 kb on + strand, within Shewana3_0440 at 514.845 kb on + strand, within Shewana3_0440 at 514.853 kb on - strand, within Shewana3_0440 at 514.919 kb on + strand, within Shewana3_0440 at 514.999 kb on - strand, within Shewana3_0440 at 515.103 kb on - strand, within Shewana3_0440 at 515.209 kb on + strand, within Shewana3_0440 at 515.283 kb on + strand, within Shewana3_0440 at 515.291 kb on - strand, within Shewana3_0440 at 515.318 kb on - strand, within Shewana3_0440 at 515.352 kb on - strand, within Shewana3_0440 at 515.366 kb on + strand, within Shewana3_0440 at 515.374 kb on - strand, within Shewana3_0440 at 515.374 kb on - strand, within Shewana3_0440 at 515.425 kb on + strand, within Shewana3_0440 at 515.433 kb on - strand, within Shewana3_0440 at 515.462 kb on + strand, within Shewana3_0440 at 515.516 kb on + strand, within Shewana3_0440 at 515.516 kb on + strand, within Shewana3_0440 at 515.524 kb on - strand, within Shewana3_0440 at 515.524 kb on - strand, within Shewana3_0440 at 515.593 kb on + strand at 515.593 kb on + strand at 515.596 kb on - strand at 515.601 kb on - strand at 515.603 kb on + strand at 515.736 kb on - strand at 515.956 kb on - strand, within purH at 515.983 kb on - strand, within purH at 515.983 kb on - strand, within purH at 515.983 kb on - strand, within purH at 516.165 kb on - strand, within purH at 516.169 kb on + strand, within purH at 516.169 kb on + strand, within purH at 516.169 kb on + strand, within purH at 516.178 kb on - strand, within purH at 516.258 kb on - strand, within purH at 516.388 kb on - strand, within purH at 516.481 kb on + strand, within purH at 516.481 kb on + strand, within purH at 516.491 kb on + strand, within purH at 516.499 kb on + strand, within purH at 516.499 kb on - strand, within purH at 516.499 kb on - strand, within purH at 516.499 kb on - strand, within purH at 516.556 kb on - strand, within purH at 516.566 kb on - strand, within purH at 516.599 kb on + strand, within purH
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 513,602 + Shewana3_0439 0.81 +0.2 513,737 - Shewana3_0439 0.86 -0.2 513,830 + Shewana3_0439 0.88 +0.1 513,838 - Shewana3_0439 0.89 +0.4 514,068 - +1.0 514,092 + +0.3 514,386 + -0.8 514,394 - -2.2 514,494 - -2.1 514,509 + -1.9 514,511 - -3.8 514,536 + Shewana3_0440 0.12 -4.2 514,552 - Shewana3_0440 0.13 -3.6 514,582 + Shewana3_0440 0.15 -4.2 514,613 - Shewana3_0440 0.18 -2.4 514,613 - Shewana3_0440 0.18 -1.6 514,713 - Shewana3_0440 0.25 -1.1 514,732 + Shewana3_0440 0.27 -3.8 514,845 + Shewana3_0440 0.36 -4.5 514,853 - Shewana3_0440 0.36 -2.6 514,919 + Shewana3_0440 0.41 -3.8 514,999 - Shewana3_0440 0.47 -3.1 515,103 - Shewana3_0440 0.55 -3.6 515,209 + Shewana3_0440 0.64 -2.3 515,283 + Shewana3_0440 0.69 -3.3 515,291 - Shewana3_0440 0.70 -2.5 515,318 - Shewana3_0440 0.72 -2.9 515,352 - Shewana3_0440 0.75 -2.5 515,366 + Shewana3_0440 0.76 -3.5 515,374 - Shewana3_0440 0.76 -2.4 515,374 - Shewana3_0440 0.76 -3.3 515,425 + Shewana3_0440 0.80 -3.3 515,433 - Shewana3_0440 0.81 -2.2 515,462 + Shewana3_0440 0.83 -0.4 515,516 + Shewana3_0440 0.87 +1.8 515,516 + Shewana3_0440 0.87 -3.5 515,524 - Shewana3_0440 0.88 -0.4 515,524 - Shewana3_0440 0.88 -3.2 515,593 + -3.8 515,593 + -2.9 515,596 - -3.2 515,601 - -3.4 515,603 + -3.2 515,736 - -0.5 515,956 - purH Shewana3_0441 0.11 -3.7 515,983 - purH Shewana3_0441 0.12 -2.9 515,983 - purH Shewana3_0441 0.12 -4.1 515,983 - purH Shewana3_0441 0.12 -4.8 516,165 - purH Shewana3_0441 0.24 -5.3 516,169 + purH Shewana3_0441 0.24 -4.4 516,169 + purH Shewana3_0441 0.24 -4.6 516,169 + purH Shewana3_0441 0.24 -4.1 516,178 - purH Shewana3_0441 0.24 -3.9 516,258 - purH Shewana3_0441 0.29 -6.2 516,388 - purH Shewana3_0441 0.38 -2.5 516,481 + purH Shewana3_0441 0.43 -3.1 516,481 + purH Shewana3_0441 0.43 -3.5 516,491 + purH Shewana3_0441 0.44 -3.5 516,499 + purH Shewana3_0441 0.45 -3.1 516,499 - purH Shewana3_0441 0.45 -4.1 516,499 - purH Shewana3_0441 0.45 -3.0 516,499 - purH Shewana3_0441 0.45 -2.6 516,556 - purH Shewana3_0441 0.48 -3.8 516,566 - purH Shewana3_0441 0.49 -4.6 516,599 + purH Shewana3_0441 0.51 -3.5
Or see this region's nucleotide sequence