Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0305 and Shewana3_0306 are separated by 353 nucleotides Shewana3_0306 and Shewana3_0307 are separated by 86 nucleotides
Shewana3_0305: Shewana3_0305 - alcohol dehydrogenase (RefSeq), at 341,231 to 342,307
_0305
Shewana3_0306: Shewana3_0306 - catalase/peroxidase HPI (RefSeq), at 342,661 to 344,847
_0306
Shewana3_0307: Shewana3_0307 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 344,934 to 346,181
_0307
Position (kb) 342
343
344
345 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 341.708 kb on + strand, within Shewana3_0305 at 341.895 kb on + strand, within Shewana3_0305 at 341.951 kb on - strand, within Shewana3_0305 at 342.467 kb on + strand at 342.486 kb on + strand at 342.486 kb on + strand at 342.486 kb on + strand at 342.600 kb on - strand at 342.821 kb on + strand at 342.837 kb on - strand at 342.837 kb on - strand at 342.839 kb on + strand at 342.898 kb on - strand, within Shewana3_0306 at 342.958 kb on + strand, within Shewana3_0306 at 343.071 kb on + strand, within Shewana3_0306 at 343.152 kb on + strand, within Shewana3_0306 at 343.152 kb on - strand, within Shewana3_0306 at 343.582 kb on + strand, within Shewana3_0306 at 343.604 kb on - strand, within Shewana3_0306 at 343.629 kb on + strand, within Shewana3_0306 at 343.766 kb on + strand, within Shewana3_0306 at 343.902 kb on + strand, within Shewana3_0306 at 344.074 kb on + strand, within Shewana3_0306 at 344.149 kb on - strand, within Shewana3_0306 at 344.149 kb on - strand, within Shewana3_0306 at 344.219 kb on + strand, within Shewana3_0306 at 344.368 kb on + strand, within Shewana3_0306 at 344.385 kb on + strand, within Shewana3_0306 at 344.407 kb on + strand, within Shewana3_0306 at 344.478 kb on - strand, within Shewana3_0306 at 344.807 kb on + strand at 344.816 kb on - strand at 344.987 kb on + strand at 344.987 kb on + strand at 344.987 kb on + strand at 345.113 kb on + strand, within Shewana3_0307 at 345.152 kb on - strand, within Shewana3_0307 at 345.239 kb on - strand, within Shewana3_0307 at 345.266 kb on - strand, within Shewana3_0307 at 345.276 kb on + strand, within Shewana3_0307 at 345.497 kb on - strand, within Shewana3_0307 at 345.684 kb on - strand, within Shewana3_0307 at 345.797 kb on + strand, within Shewana3_0307 at 345.819 kb on - strand, within Shewana3_0307
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 341,708 + Shewana3_0305 0.44 -0.8 341,895 + Shewana3_0305 0.62 +0.0 341,951 - Shewana3_0305 0.67 +0.9 342,467 + +1.0 342,486 + +0.9 342,486 + +0.2 342,486 + -0.4 342,600 - -0.1 342,821 + -2.2 342,837 - -0.4 342,837 - +0.8 342,839 + +0.9 342,898 - Shewana3_0306 0.11 -0.9 342,958 + Shewana3_0306 0.14 +2.9 343,071 + Shewana3_0306 0.19 +0.9 343,152 + Shewana3_0306 0.22 +0.1 343,152 - Shewana3_0306 0.22 -0.2 343,582 + Shewana3_0306 0.42 -0.6 343,604 - Shewana3_0306 0.43 +0.5 343,629 + Shewana3_0306 0.44 +0.3 343,766 + Shewana3_0306 0.51 +0.0 343,902 + Shewana3_0306 0.57 +0.9 344,074 + Shewana3_0306 0.65 +0.2 344,149 - Shewana3_0306 0.68 +0.4 344,149 - Shewana3_0306 0.68 +0.3 344,219 + Shewana3_0306 0.71 -0.2 344,368 + Shewana3_0306 0.78 +0.4 344,385 + Shewana3_0306 0.79 -0.7 344,407 + Shewana3_0306 0.80 -0.4 344,478 - Shewana3_0306 0.83 +0.1 344,807 + +0.2 344,816 - +1.7 344,987 + -1.0 344,987 + -0.7 344,987 + +0.3 345,113 + Shewana3_0307 0.14 +0.3 345,152 - Shewana3_0307 0.17 -0.3 345,239 - Shewana3_0307 0.24 +0.6 345,266 - Shewana3_0307 0.27 -0.3 345,276 + Shewana3_0307 0.27 +0.3 345,497 - Shewana3_0307 0.45 +0.6 345,684 - Shewana3_0307 0.60 +0.9 345,797 + Shewana3_0307 0.69 -0.2 345,819 - Shewana3_0307 0.71 +0.5
Or see this region's nucleotide sequence