Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0229 and Shewana3_0230 are separated by 1 nucleotides Shewana3_0230 and Shewana3_0231 are separated by 11 nucleotides Shewana3_0231 and Shewana3_0232 are separated by 325 nucleotides Shewana3_0232 and Shewana3_0233 are separated by 83 nucleotides
Shewana3_0229: Shewana3_0229 - heme exporter protein CcmC (RefSeq), at 258,783 to 259,529
_0229
Shewana3_0230: Shewana3_0230 - heme exporter protein CcmB (RefSeq), at 259,531 to 260,217
_0230
Shewana3_0231: Shewana3_0231 - cytochrome c biogenesis protein CcmA (RefSeq), at 260,229 to 260,879
_0231
Shewana3_0232: Shewana3_0232 - cytochrome c, class I (RefSeq), at 261,205 to 261,504
_0232
Shewana3_0233: Shewana3_0233 - TPR repeat-containing protein (RefSeq), at 261,588 to 262,835
_0233
Position (kb) 260
261 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 259.512 kb on - strand at 259.572 kb on + strand at 259.734 kb on + strand, within Shewana3_0230 at 259.742 kb on + strand, within Shewana3_0230 at 259.789 kb on - strand, within Shewana3_0230 at 259.799 kb on + strand, within Shewana3_0230 at 259.932 kb on + strand, within Shewana3_0230 at 259.937 kb on + strand, within Shewana3_0230 at 259.940 kb on - strand, within Shewana3_0230 at 260.172 kb on + strand at 260.201 kb on - strand at 260.226 kb on + strand at 260.234 kb on - strand at 260.307 kb on - strand, within Shewana3_0231 at 260.451 kb on + strand, within Shewana3_0231 at 260.537 kb on + strand, within Shewana3_0231 at 260.593 kb on + strand, within Shewana3_0231 at 260.696 kb on + strand, within Shewana3_0231 at 260.697 kb on - strand, within Shewana3_0231 at 260.697 kb on - strand, within Shewana3_0231 at 260.700 kb on + strand, within Shewana3_0231 at 260.704 kb on - strand, within Shewana3_0231 at 260.708 kb on - strand, within Shewana3_0231 at 260.708 kb on - strand, within Shewana3_0231 at 260.835 kb on - strand at 260.846 kb on + strand at 260.955 kb on - strand at 260.955 kb on - strand at 260.993 kb on + strand at 261.129 kb on + strand at 261.130 kb on + strand at 261.147 kb on - strand at 261.246 kb on - strand, within Shewana3_0232 at 261.302 kb on + strand, within Shewana3_0232 at 261.302 kb on - strand, within Shewana3_0232 at 261.302 kb on - strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.399 kb on - strand, within Shewana3_0232 at 261.399 kb on - strand, within Shewana3_0232 at 261.399 kb on - strand, within Shewana3_0232 at 261.399 kb on - strand, within Shewana3_0232 at 261.399 kb on - strand, within Shewana3_0232 at 261.399 kb on - strand, within Shewana3_0232 at 261.399 kb on - strand, within Shewana3_0232 at 261.401 kb on + strand, within Shewana3_0232 at 261.401 kb on + strand, within Shewana3_0232 at 261.548 kb on - strand at 261.565 kb on + strand at 261.573 kb on - strand at 261.596 kb on - strand at 261.624 kb on - strand at 261.752 kb on + strand, within Shewana3_0233 at 261.755 kb on - strand, within Shewana3_0233 at 261.824 kb on + strand, within Shewana3_0233 at 261.854 kb on - strand, within Shewana3_0233
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 259,512 - -0.1 259,572 + -1.4 259,734 + Shewana3_0230 0.30 -2.5 259,742 + Shewana3_0230 0.31 -2.0 259,789 - Shewana3_0230 0.38 +0.9 259,799 + Shewana3_0230 0.39 -1.8 259,932 + Shewana3_0230 0.58 -1.8 259,937 + Shewana3_0230 0.59 +0.1 259,940 - Shewana3_0230 0.60 -1.6 260,172 + +2.5 260,201 - -1.1 260,226 + -2.8 260,234 - +0.2 260,307 - Shewana3_0231 0.12 -1.6 260,451 + Shewana3_0231 0.34 -0.3 260,537 + Shewana3_0231 0.47 +0.2 260,593 + Shewana3_0231 0.56 -1.1 260,696 + Shewana3_0231 0.72 -2.2 260,697 - Shewana3_0231 0.72 +0.1 260,697 - Shewana3_0231 0.72 -1.7 260,700 + Shewana3_0231 0.72 -3.3 260,704 - Shewana3_0231 0.73 -2.7 260,708 - Shewana3_0231 0.74 -1.3 260,708 - Shewana3_0231 0.74 -2.3 260,835 - -0.3 260,846 + -1.2 260,955 - +0.8 260,955 - +0.2 260,993 + +0.1 261,129 + -1.7 261,130 + -0.6 261,147 - +0.1 261,246 - Shewana3_0232 0.14 -2.4 261,302 + Shewana3_0232 0.32 -1.2 261,302 - Shewana3_0232 0.32 -0.1 261,302 - Shewana3_0232 0.32 -1.8 261,391 + Shewana3_0232 0.62 -1.1 261,391 + Shewana3_0232 0.62 -0.9 261,391 + Shewana3_0232 0.62 -1.7 261,391 + Shewana3_0232 0.62 -1.0 261,391 + Shewana3_0232 0.62 -0.9 261,391 + Shewana3_0232 0.62 -0.4 261,391 + Shewana3_0232 0.62 -2.0 261,391 + Shewana3_0232 0.62 -2.7 261,391 + Shewana3_0232 0.62 -0.7 261,391 + Shewana3_0232 0.62 -0.8 261,399 - Shewana3_0232 0.65 +0.1 261,399 - Shewana3_0232 0.65 -1.0 261,399 - Shewana3_0232 0.65 -0.8 261,399 - Shewana3_0232 0.65 -1.5 261,399 - Shewana3_0232 0.65 -0.2 261,399 - Shewana3_0232 0.65 -2.4 261,399 - Shewana3_0232 0.65 +1.1 261,401 + Shewana3_0232 0.65 -1.7 261,401 + Shewana3_0232 0.65 -1.3 261,548 - +0.4 261,565 + +0.2 261,573 - -0.4 261,596 - +0.4 261,624 - -0.5 261,752 + Shewana3_0233 0.13 +1.7 261,755 - Shewana3_0233 0.13 +0.7 261,824 + Shewana3_0233 0.19 +1.0 261,854 - Shewana3_0233 0.21 +0.5
Or see this region's nucleotide sequence