Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0074

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0072 and Shewana3_0073 are separated by 3 nucleotidesShewana3_0073 and Shewana3_0074 are separated by 49 nucleotidesShewana3_0074 and Shewana3_0075 are separated by 88 nucleotidesShewana3_0075 and Shewana3_0076 are separated by 3 nucleotides Shewana3_0072: Shewana3_0072 - transcriptional regulator (RefSeq), at 84,734 to 85,777 _0072 Shewana3_0073: Shewana3_0073 - hypothetical protein (RefSeq), at 85,781 to 86,041 _0073 Shewana3_0074: Shewana3_0074 - transport protein, putative (RefSeq), at 86,091 to 87,230 _0074 Shewana3_0075: Shewana3_0075 - ABC transporter related (RefSeq), at 87,319 to 88,053 _0075 Shewana3_0076: Shewana3_0076 - TAP domain-containing protein (RefSeq), at 88,057 to 89,676 _0076 Position (kb) 86 87 88Strain fitness (log2 ratio) -2 -1 0 1at 85.194 kb on + strand, within Shewana3_0072at 85.227 kb on - strand, within Shewana3_0072at 85.268 kb on - strand, within Shewana3_0072at 85.272 kb on + strand, within Shewana3_0072at 85.304 kb on + strand, within Shewana3_0072at 85.380 kb on + strand, within Shewana3_0072at 85.425 kb on - strand, within Shewana3_0072at 85.517 kb on - strand, within Shewana3_0072at 85.633 kb on - strand, within Shewana3_0072at 85.689 kb on + strandat 85.710 kb on - strandat 85.769 kb on - strandat 86.004 kb on - strand, within Shewana3_0073at 86.059 kb on - strandat 86.340 kb on + strand, within Shewana3_0074at 86.348 kb on - strand, within Shewana3_0074at 86.358 kb on - strand, within Shewana3_0074at 86.359 kb on - strand, within Shewana3_0074at 86.438 kb on - strand, within Shewana3_0074at 86.469 kb on + strand, within Shewana3_0074at 86.501 kb on - strand, within Shewana3_0074at 86.501 kb on - strand, within Shewana3_0074at 86.528 kb on - strand, within Shewana3_0074at 86.530 kb on + strand, within Shewana3_0074at 86.540 kb on + strand, within Shewana3_0074at 86.646 kb on + strand, within Shewana3_0074at 86.683 kb on + strand, within Shewana3_0074at 86.733 kb on - strand, within Shewana3_0074at 86.794 kb on - strand, within Shewana3_0074at 86.815 kb on - strand, within Shewana3_0074at 86.830 kb on + strand, within Shewana3_0074at 87.002 kb on + strand, within Shewana3_0074at 87.036 kb on + strand, within Shewana3_0074at 87.095 kb on - strand, within Shewana3_0074at 87.169 kb on - strandat 87.331 kb on + strandat 87.334 kb on - strandat 87.384 kb on - strandat 87.402 kb on + strand, within Shewana3_0075at 87.405 kb on - strand, within Shewana3_0075at 87.433 kb on - strand, within Shewana3_0075at 87.738 kb on + strand, within Shewana3_0075at 87.783 kb on + strand, within Shewana3_0075at 87.783 kb on + strand, within Shewana3_0075at 87.785 kb on + strand, within Shewana3_0075at 87.791 kb on - strand, within Shewana3_0075at 87.801 kb on - strand, within Shewana3_0075at 87.803 kb on - strand, within Shewana3_0075at 87.839 kb on + strand, within Shewana3_0075at 87.896 kb on + strand, within Shewana3_0075at 87.896 kb on + strand, within Shewana3_0075at 88.006 kb on + strandat 88.014 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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85,194 + Shewana3_0072 0.44 -1.9
85,227 - Shewana3_0072 0.47 +0.2
85,268 - Shewana3_0072 0.51 -0.6
85,272 + Shewana3_0072 0.52 -0.6
85,304 + Shewana3_0072 0.55 +0.1
85,380 + Shewana3_0072 0.62 +1.0
85,425 - Shewana3_0072 0.66 +0.3
85,517 - Shewana3_0072 0.75 +0.8
85,633 - Shewana3_0072 0.86 +0.8
85,689 + +0.7
85,710 - -0.1
85,769 - +0.5
86,004 - Shewana3_0073 0.85 -1.0
86,059 - +0.3
86,340 + Shewana3_0074 0.22 +0.1
86,348 - Shewana3_0074 0.23 +1.1
86,358 - Shewana3_0074 0.23 +0.4
86,359 - Shewana3_0074 0.24 -0.8
86,438 - Shewana3_0074 0.30 -1.0
86,469 + Shewana3_0074 0.33 +0.4
86,501 - Shewana3_0074 0.36 +0.4
86,501 - Shewana3_0074 0.36 -1.0
86,528 - Shewana3_0074 0.38 -1.5
86,530 + Shewana3_0074 0.39 +1.5
86,540 + Shewana3_0074 0.39 -0.4
86,646 + Shewana3_0074 0.49 +1.7
86,683 + Shewana3_0074 0.52 -0.2
86,733 - Shewana3_0074 0.56 +0.8
86,794 - Shewana3_0074 0.62 +0.1
86,815 - Shewana3_0074 0.64 -2.0
86,830 + Shewana3_0074 0.65 +0.4
87,002 + Shewana3_0074 0.80 +0.3
87,036 + Shewana3_0074 0.83 -0.1
87,095 - Shewana3_0074 0.88 +1.2
87,169 - -0.3
87,331 + +0.0
87,334 - +0.0
87,384 - +0.1
87,402 + Shewana3_0075 0.11 -0.3
87,405 - Shewana3_0075 0.12 +0.1
87,433 - Shewana3_0075 0.16 -0.6
87,738 + Shewana3_0075 0.57 -0.6
87,783 + Shewana3_0075 0.63 +0.2
87,783 + Shewana3_0075 0.63 -0.4
87,785 + Shewana3_0075 0.63 +0.5
87,791 - Shewana3_0075 0.64 -0.0
87,801 - Shewana3_0075 0.66 -0.1
87,803 - Shewana3_0075 0.66 -0.1
87,839 + Shewana3_0075 0.71 +0.6
87,896 + Shewana3_0075 0.79 +0.7
87,896 + Shewana3_0075 0.79 -0.5
88,006 + -1.0
88,014 - +0.1

Or see this region's nucleotide sequence