Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4354 and Shewana3_4355 are separated by 1 nucleotides Shewana3_4355 and Shewana3_4356 are separated by 200 nucleotides Shewana3_4356 and Shewana3_4357 are separated by 9 nucleotides
Shewana3_4354: Shewana3_4354 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 238,948 to 240,675
_4354
Shewana3_4355: Shewana3_4355 - hypothetical protein (RefSeq), at 240,677 to 241,708
_4355
Shewana3_4356: Shewana3_4356 - XRE family transcriptional regulator (RefSeq), at 241,909 to 242,253
_4356
Shewana3_4357: Shewana3_4357 - hypothetical protein (RefSeq), at 242,263 to 243,072
_4357
Position (kb) 240
241
242 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 239.688 kb on + strand, within Shewana3_4354 at 239.701 kb on + strand, within Shewana3_4354 at 239.739 kb on - strand, within Shewana3_4354 at 239.744 kb on + strand, within Shewana3_4354 at 239.767 kb on - strand, within Shewana3_4354 at 239.767 kb on - strand, within Shewana3_4354 at 239.859 kb on + strand, within Shewana3_4354 at 239.960 kb on + strand, within Shewana3_4354 at 240.038 kb on - strand, within Shewana3_4354 at 240.082 kb on - strand, within Shewana3_4354 at 240.149 kb on + strand, within Shewana3_4354 at 240.246 kb on + strand, within Shewana3_4354 at 240.284 kb on + strand, within Shewana3_4354 at 240.284 kb on - strand, within Shewana3_4354 at 240.415 kb on + strand, within Shewana3_4354 at 240.422 kb on - strand, within Shewana3_4354 at 240.533 kb on - strand at 240.713 kb on + strand at 240.713 kb on + strand at 240.845 kb on - strand, within Shewana3_4355 at 240.935 kb on - strand, within Shewana3_4355 at 240.950 kb on - strand, within Shewana3_4355 at 241.161 kb on + strand, within Shewana3_4355 at 241.252 kb on + strand, within Shewana3_4355 at 241.379 kb on - strand, within Shewana3_4355 at 241.485 kb on + strand, within Shewana3_4355 at 241.493 kb on - strand, within Shewana3_4355 at 241.494 kb on + strand, within Shewana3_4355 at 241.617 kb on - strand at 241.621 kb on - strand at 241.629 kb on - strand at 241.643 kb on + strand at 241.644 kb on + strand at 241.652 kb on - strand at 241.774 kb on + strand at 241.774 kb on + strand at 241.782 kb on - strand at 241.786 kb on + strand at 241.986 kb on + strand, within Shewana3_4356 at 241.986 kb on + strand, within Shewana3_4356 at 242.044 kb on + strand, within Shewana3_4356 at 242.107 kb on - strand, within Shewana3_4356 at 242.423 kb on - strand, within Shewana3_4357 at 242.509 kb on + strand, within Shewana3_4357 at 242.518 kb on + strand, within Shewana3_4357 at 242.617 kb on + strand, within Shewana3_4357 at 242.638 kb on - strand, within Shewana3_4357 at 242.658 kb on + strand, within Shewana3_4357
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 239,688 + Shewana3_4354 0.43 -0.6 239,701 + Shewana3_4354 0.44 +0.8 239,739 - Shewana3_4354 0.46 -0.3 239,744 + Shewana3_4354 0.46 -0.2 239,767 - Shewana3_4354 0.47 -0.4 239,767 - Shewana3_4354 0.47 -1.8 239,859 + Shewana3_4354 0.53 +3.2 239,960 + Shewana3_4354 0.59 -0.9 240,038 - Shewana3_4354 0.63 +0.0 240,082 - Shewana3_4354 0.66 +0.0 240,149 + Shewana3_4354 0.70 +0.3 240,246 + Shewana3_4354 0.75 +0.7 240,284 + Shewana3_4354 0.77 -0.6 240,284 - Shewana3_4354 0.77 +0.4 240,415 + Shewana3_4354 0.85 -0.2 240,422 - Shewana3_4354 0.85 +0.2 240,533 - -0.4 240,713 + -1.4 240,713 + +0.0 240,845 - Shewana3_4355 0.16 -0.2 240,935 - Shewana3_4355 0.25 +3.2 240,950 - Shewana3_4355 0.26 +0.7 241,161 + Shewana3_4355 0.47 +1.2 241,252 + Shewana3_4355 0.56 -0.4 241,379 - Shewana3_4355 0.68 -0.3 241,485 + Shewana3_4355 0.78 +0.2 241,493 - Shewana3_4355 0.79 +0.6 241,494 + Shewana3_4355 0.79 +1.3 241,617 - -0.4 241,621 - -1.2 241,629 - +0.4 241,643 + -0.3 241,644 + +1.0 241,652 - -0.6 241,774 + -0.3 241,774 + +0.1 241,782 - +0.2 241,786 + -0.5 241,986 + Shewana3_4356 0.22 -0.6 241,986 + Shewana3_4356 0.22 -0.1 242,044 + Shewana3_4356 0.39 +0.6 242,107 - Shewana3_4356 0.57 +1.0 242,423 - Shewana3_4357 0.20 +1.0 242,509 + Shewana3_4357 0.30 +0.2 242,518 + Shewana3_4357 0.31 -0.5 242,617 + Shewana3_4357 0.44 +0.7 242,638 - Shewana3_4357 0.46 +1.6 242,658 + Shewana3_4357 0.49 +0.8
Or see this region's nucleotide sequence