Strain Fitness in Shewanella loihica PV-4 around Shew_2044

Experiment: Cobalt chloride 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2043 and Shew_2044 are separated by 400 nucleotidesShew_2044 and Shew_2045 are separated by 102 nucleotidesShew_2045 and Shew_2046 are separated by 21 nucleotides Shew_2043: Shew_2043 - cation diffusion facilitator family transporter (RefSeq), at 2,358,253 to 2,359,341 _2043 Shew_2044: Shew_2044 - ecotin precursor (RefSeq), at 2,359,742 to 2,360,299 _2044 Shew_2045: Shew_2045 - keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (RefSeq), at 2,360,402 to 2,361,043 _2045 Shew_2046: Shew_2046 - phosphogluconate dehydratase (RefSeq), at 2,361,065 to 2,362,891 _2046 Position (kb) 2359 2360 2361Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2359.009 kb on - strand, within Shew_2043at 2359.372 kb on + strandat 2359.812 kb on + strand, within Shew_2044at 2359.814 kb on + strand, within Shew_2044at 2359.820 kb on - strand, within Shew_2044at 2359.955 kb on - strand, within Shew_2044at 2361.093 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.08 mM
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2,359,009 - Shew_2043 0.69 -4.1
2,359,372 + -4.9
2,359,812 + Shew_2044 0.13 -2.1
2,359,814 + Shew_2044 0.13 -0.1
2,359,820 - Shew_2044 0.14 -0.7
2,359,955 - Shew_2044 0.38 -0.9
2,361,093 - -0.1

Or see this region's nucleotide sequence