Experiment: D-Alanine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_725 and HP15_726 overlap by 1 nucleotides HP15_726 and HP15_727 are separated by 25 nucleotides HP15_727 and HP15_728 are separated by 76 nucleotides
HP15_725: HP15_725 - two component, sigma54 specific, transcriptional regulator, Fis family, at 735,528 to 736,880
_725
HP15_726: HP15_726 - hypothetical protein, at 736,880 to 737,008
_726
HP15_727: HP15_727 - methyl-accepting chemotaxis sensory transducer, at 737,034 to 738,728
_727
HP15_728: HP15_728 - PhoH family protein, at 738,805 to 740,160
_728
Position (kb) 737
738
739 Strain fitness (log2 ratio) -2
-1
0
1
2 at 736.103 kb on - strand, within HP15_725 at 736.256 kb on + strand, within HP15_725 at 736.282 kb on - strand, within HP15_725 at 736.283 kb on - strand, within HP15_725 at 736.490 kb on + strand, within HP15_725 at 736.560 kb on - strand, within HP15_725 at 736.620 kb on + strand, within HP15_725 at 736.628 kb on - strand, within HP15_725 at 736.673 kb on + strand, within HP15_725 at 737.113 kb on + strand at 737.113 kb on + strand at 737.119 kb on + strand at 737.127 kb on - strand at 737.269 kb on + strand, within HP15_727 at 737.277 kb on - strand, within HP15_727 at 737.277 kb on - strand, within HP15_727 at 737.277 kb on - strand, within HP15_727 at 737.373 kb on - strand, within HP15_727 at 737.375 kb on + strand, within HP15_727 at 737.383 kb on + strand, within HP15_727 at 737.391 kb on - strand, within HP15_727 at 737.391 kb on - strand, within HP15_727 at 737.457 kb on - strand, within HP15_727 at 737.459 kb on + strand, within HP15_727 at 737.467 kb on - strand, within HP15_727 at 737.467 kb on - strand, within HP15_727 at 737.467 kb on - strand, within HP15_727 at 737.467 kb on - strand, within HP15_727 at 737.472 kb on - strand, within HP15_727 at 737.500 kb on - strand, within HP15_727 at 737.601 kb on - strand, within HP15_727 at 737.661 kb on + strand, within HP15_727 at 737.766 kb on + strand, within HP15_727 at 737.837 kb on - strand, within HP15_727 at 737.888 kb on + strand, within HP15_727 at 737.896 kb on - strand, within HP15_727 at 738.081 kb on + strand, within HP15_727 at 738.108 kb on + strand, within HP15_727 at 738.123 kb on - strand, within HP15_727 at 738.199 kb on - strand, within HP15_727 at 738.199 kb on - strand, within HP15_727 at 738.199 kb on - strand, within HP15_727 at 738.262 kb on - strand, within HP15_727 at 738.314 kb on + strand at 738.401 kb on + strand, within HP15_727 at 738.475 kb on + strand, within HP15_727 at 738.485 kb on + strand, within HP15_727 at 738.485 kb on + strand, within HP15_727 at 738.544 kb on - strand, within HP15_727 at 738.572 kb on + strand at 738.597 kb on - strand at 738.729 kb on - strand at 738.853 kb on + strand at 738.875 kb on + strand at 738.907 kb on + strand at 738.915 kb on - strand at 738.959 kb on - strand, within HP15_728 at 738.975 kb on + strand, within HP15_728 at 739.007 kb on + strand, within HP15_728 at 739.128 kb on + strand, within HP15_728 at 739.223 kb on + strand, within HP15_728 at 739.243 kb on + strand, within HP15_728 at 739.358 kb on - strand, within HP15_728 at 739.361 kb on + strand, within HP15_728 at 739.482 kb on - strand, within HP15_728 at 739.676 kb on + strand, within HP15_728
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine as (N) remove 736,103 - HP15_725 0.42 +0.4 736,256 + HP15_725 0.54 -0.8 736,282 - HP15_725 0.56 -1.7 736,283 - HP15_725 0.56 -0.4 736,490 + HP15_725 0.71 +0.9 736,560 - HP15_725 0.76 -2.1 736,620 + HP15_725 0.81 -1.5 736,628 - HP15_725 0.81 -1.3 736,673 + HP15_725 0.85 -1.8 737,113 + -1.1 737,113 + -1.4 737,119 + -0.2 737,127 - -0.9 737,269 + HP15_727 0.14 +0.0 737,277 - HP15_727 0.14 +1.2 737,277 - HP15_727 0.14 -1.5 737,277 - HP15_727 0.14 +1.4 737,373 - HP15_727 0.20 +1.2 737,375 + HP15_727 0.20 -1.9 737,383 + HP15_727 0.21 +1.6 737,391 - HP15_727 0.21 -0.5 737,391 - HP15_727 0.21 -0.4 737,457 - HP15_727 0.25 +1.4 737,459 + HP15_727 0.25 +1.6 737,467 - HP15_727 0.26 -0.7 737,467 - HP15_727 0.26 -1.1 737,467 - HP15_727 0.26 -0.8 737,467 - HP15_727 0.26 -1.1 737,472 - HP15_727 0.26 +2.0 737,500 - HP15_727 0.27 -2.0 737,601 - HP15_727 0.33 -0.7 737,661 + HP15_727 0.37 -0.3 737,766 + HP15_727 0.43 +1.5 737,837 - HP15_727 0.47 +1.7 737,888 + HP15_727 0.50 +1.3 737,896 - HP15_727 0.51 -0.4 738,081 + HP15_727 0.62 -1.3 738,108 + HP15_727 0.63 +0.1 738,123 - HP15_727 0.64 +0.7 738,199 - HP15_727 0.69 -0.6 738,199 - HP15_727 0.69 -0.0 738,199 - HP15_727 0.69 -0.9 738,262 - HP15_727 0.72 +0.1 738,314 + +2.1 738,401 + HP15_727 0.81 -0.6 738,475 + HP15_727 0.85 -1.6 738,485 + HP15_727 0.86 -0.2 738,485 + HP15_727 0.86 -1.3 738,544 - HP15_727 0.89 -0.6 738,572 + -0.1 738,597 - +0.2 738,729 - -0.2 738,853 + +1.5 738,875 + +1.1 738,907 + +1.5 738,915 - -0.8 738,959 - HP15_728 0.11 -0.8 738,975 + HP15_728 0.13 +2.5 739,007 + HP15_728 0.15 -1.4 739,128 + HP15_728 0.24 -0.1 739,223 + HP15_728 0.31 -0.5 739,243 + HP15_728 0.32 -1.3 739,358 - HP15_728 0.41 +1.4 739,361 + HP15_728 0.41 +1.6 739,482 - HP15_728 0.50 -0.5 739,676 + HP15_728 0.64 +1.2
Or see this region's nucleotide sequence